PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 308aa MW: 32863.3 Da PI: 7.687 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 49 | 108 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+kk+ Aco012452.1 49 QDQALRCPRCDSTNTKFCYYNNYSLSQPRFFCKGCRRYWTQGGSLRNVPVGGGCRKSKKK 108 68999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 42 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-33 | 50 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEISSAQYQF MATSHSIEQA LIACPNKTHQ QQQQQQQQQL QDKKPRPHQD QALRCPRCDS 60 TNTKFCYYNN YSLSQPRFFC KGCRRYWTQG GSLRNVPVGG GCRKSKKKLS SSSSSSLSPC 120 SSSSTSPSSS SSSLPSKNTT TNLSITPLLS NLIHAPFSYD PSDLTLAFAG SDQHGNGHSL 180 LLGAGPSPSP NPCPGGPTSG FFDILRGGFL GSENFAGFHM PCYGLDNNNN NNNDVGGSSG 240 GSEVVVLPFE ERHGGAVTHE VEGSSCKDMN NGVEGINGAM NLDLGRDYWG INGVASTWHG 300 LINSSLI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101105.1 | 0.0 | dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A199UVY0 | 0.0 | A0A199UVY0_ANACO; Dof zinc finger protein PBF | ||||
STRING | XP_008783672.1 | 2e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-33 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco012452.1 |