PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012417.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 270aa    MW: 30214.9 Da    PI: 8.4678
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012417.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.11.1e-2843144391
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 
                  ++kdrhsk+ T +g++dRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ +                  +     +c++++ + ++
  Aco012417.1  43 KGKDRHSKVTTVRGLKDRRIRLSVLTAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLqmppgnfiqfpqmapregG-----NCSTHEAVIET 135
                  68*************************************************************4444444433332222220.....22222222222 PP

          TCP  83 snsssgkaa 91 
                   +++ ++++
  Aco012417.1 136 IHQQLTASS 144
                  222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.69844102IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2744162IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLVREGASLT KQESILTDGK APTSTTQVWF RNPRIVRVSR GFKGKDRHSK VTTVRGLKDR  60
RIRLSVLTAI QLYDLQDKLG LNQPSKVVDW LLNAAQHEID KLPPLQMPPG NFIQFPQMAP  120
REGGNCSTHE AVIETIHQQL TASSSMANNS FFNNNISEDL MTISNGDVRM GIKPKGNYIN  180
ILGGNDTENQ IAETYTPYHQ WGSSDAWMSQ SGSHSSQEES ARVSDQAPKF ALTFDAKQHN  240
YFQIANLQLS QNLFDHINLN TLQETMKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1849103155Putative transcription factor PCF6
5zkt_B5e-1849103155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085553.10.0transcription factor PCF7-like isoform X1
RefseqXP_020085562.10.0transcription factor PCF7-like isoform X1
RefseqXP_020085570.10.0transcription factor PCF7-like isoform X1
TrEMBLA0A2H3XZZ99e-60A0A2H3XZZ9_PHODC; transcription factor TCP13-like
STRINGXP_008791353.12e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5