PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | TCP | ||||||||
Protein Properties | Length: 270aa MW: 30214.9 Da PI: 8.4678 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.1 | 1.1e-28 | 43 | 144 | 3 | 91 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 ++kdrhsk+ T +g++dRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ + + +c++++ + ++ Aco012417.1 43 KGKDRHSKVTTVRGLKDRRIRLSVLTAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLqmppgnfiqfpqmapregG-----NCSTHEAVIET 135 68*************************************************************4444444433332222220.....22222222222 PP TCP 83 snsssgkaa 91 +++ ++++ Aco012417.1 136 IHQQLTASS 144 222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.698 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-27 | 44 | 162 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MLVREGASLT KQESILTDGK APTSTTQVWF RNPRIVRVSR GFKGKDRHSK VTTVRGLKDR 60 RIRLSVLTAI QLYDLQDKLG LNQPSKVVDW LLNAAQHEID KLPPLQMPPG NFIQFPQMAP 120 REGGNCSTHE AVIETIHQQL TASSSMANNS FFNNNISEDL MTISNGDVRM GIKPKGNYIN 180 ILGGNDTENQ IAETYTPYHQ WGSSDAWMSQ SGSHSSQEES ARVSDQAPKF ALTFDAKQHN 240 YFQIANLQLS QNLFDHINLN TLQETMKNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085553.1 | 0.0 | transcription factor PCF7-like isoform X1 | ||||
Refseq | XP_020085562.1 | 0.0 | transcription factor PCF7-like isoform X1 | ||||
Refseq | XP_020085570.1 | 0.0 | transcription factor PCF7-like isoform X1 | ||||
TrEMBL | A0A2H3XZZ9 | 9e-60 | A0A2H3XZZ9_PHODC; transcription factor TCP13-like | ||||
STRING | XP_008791353.1 | 2e-60 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Aco012417.1 |