PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012266.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 335aa    MW: 36913.4 Da    PI: 5.2675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012266.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.2e-143077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
      Aco012266.1 30 KGLWSPEEDDKLMSYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYL 77
                     678*******************************************97 PP
2Myb_DNA-binding51.91.7e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
      Aco012266.1  83 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 126
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9122577IPR017930Myb domain
SuperFamilySSF466891.29E-2728124IPR009057Homeodomain-like
SMARTSM007171.2E-92979IPR001005SANT/Myb domain
PfamPF002496.5E-133077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-223184IPR009057Homeodomain-like
CDDcd001677.62E-83377No hitNo description
PROSITE profilePS5129425.69978132IPR017930Myb domain
SMARTSM007175.3E-1682130IPR001005SANT/Myb domain
PfamPF002494.1E-1583126IPR001005SANT/Myb domain
CDDcd001674.23E-1185125No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2685133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRKPDSQVKN GPSNANLGNM ANIGAGKLRK GLWSPEEDDK LMSYMLSNGQ GCWSDVARNA  60
GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EELIIHLHSI LGNRWSQIAA RLPGRTDNEI  120
KNFWNSTIKK RLKNSSPSSS NQSGSSESKI LVEGLVGINK HKSISMRMDS LSSSSSSSMK  180
SFPVSTYDLL PFPGEGSGMT AISDYYFQEP KGLIQVVELQ ENYYGDHGLS FEKSLMGGGG  240
GGGCELFVPP LMSESVEENP TNNNCRDTTV ITIGDECLDR NTSDITKING DNNSNNIVGS  300
GMYWEGENIR VGEWDLENLM KDVSPFPFLD FQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27241321108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099675.10.0transcription factor MYB46-like
RefseqXP_020099682.10.0transcription factor MYB46-like
TrEMBLA0A199VQ831e-176A0A199VQ83_ANACO; Transcription factor MYB46
STRINGXP_008775367.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-69myb domain protein 46