PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012157.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 349aa    MW: 38789.1 Da    PI: 4.6211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012157.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19116165255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg++ t+eeAa+a++a +++++g
  Aco012157.1 116 QYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNTPEEAARAYDAEARRIRG 165
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-37116179IPR001471AP2/ERF domain
CDDcd000187.46E-32116174No hitNo description
PROSITE profilePS5103224.25116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-31116175IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22116174IPR016177DNA-binding domain
PfamPF008472.7E-12117165IPR001471AP2/ERF domain
PRINTSPR003678.1E-11117128IPR001471AP2/ERF domain
PRINTSPR003678.1E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MCGGAIISGY VPAAQSRGLT NADFMWPGLK KTTQKEGKKH YPAEVGADFG FDADFDFDFD  60
ADFAEFEDEP GEVSEDEPFF VDTFKAPFLR DAPAALKAVE YHRPAAKSAK RKRKNQYRGI  120
RRRPWGKWAA EIRDPRKGVR VWLGTYNTPE EAARAYDAEA RRIRGKKAKV NFPDESPSSA  180
QKCSPKPTGI SSSNLVPPEK LNLNPALNHP NDPNSCFFST FDFIEEKAPI IELSENPSSF  240
AAIKPVSPPL SDVGSNSFDS YYDWENEAEK MKSSIGEAVP VNEANISVKL FEDTNAFESY  300
IKLLQLPYFE ESSDDSIGSI LSNDVTQDIV TDANLWGFDD LRTLSSVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-201151751374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109123KRKRKNQYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633031e-123KM663303.1 Ananas bracteatus clone 47635b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112276.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A199VS740.0A0A199VS74_ANACO; Ethylene-responsive transcription factor 1
STRINGXP_008784363.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-32related to AP2 12