PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012088.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 377aa    MW: 42109.2 Da    PI: 6.2559
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012088.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.2e-1350107156
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                  s y+GV++++++gr++A+++d  ++n  ++k+   g ++ +e Aa+a++ a++k++g+
  Aco012088.1  50 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWGH 107
                  78*******************9999888775555599******************997 PP
2AP251.13.3e-16149200155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Aco012088.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1550116IPR016177DNA-binding domain
PfamPF008475.1E-950107IPR001471AP2/ERF domain
SMARTSM003806.4E-2151120IPR001471AP2/ERF domain
PROSITE profilePS5103218.96651114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1351115IPR001471AP2/ERF domain
PRINTSPR003674.4E-65263IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17149210IPR016177DNA-binding domain
CDDcd000183.30E-23149210No hitNo description
PfamPF008476.0E-12149200IPR001471AP2/ERF domain
SMARTSM003801.2E-24150214IPR001471AP2/ERF domain
PROSITE profilePS5103218.334150208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17150209IPR001471AP2/ERF domain
PRINTSPR003674.4E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAKSQKKNTS HRRESTSANT NNANNANNNG VKAKRTRKSV PRDSPLQRSS VYRGVTRHRW  60
TGRYEAHLWD KNCWNESQNK KGKQGAYDDE EAAARAYDLA ALKYWGHDTI LNFPVSNYEE  120
ELKDMEGLSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPAT DASPNPNPSP SPSPSPDSTI  240
PFPSSILDLT HDASALDECS FLQQQQAMDQ EISQLNDPHP APSATASSAL GLLLQSTKFK  300
EMLERTSAGG GGEETSPSTE MLPPEFERRP SSCSFPEDIQ TFFEGQNSEN YIDDNDAIFR  360
DLDAFSSSIF ECALDS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110268.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A199VQA40.0A0A199VQA4_ANACO; AP2-like ethylene-responsive transcription factor
STRINGAquca_048_00034.11e-157(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-87ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]