PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011985.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 280aa MW: 29909.1 Da PI: 7.1601

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011985.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.6e-12	109	151	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++YIk+L Aco011985.1 109 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYIKEL 151 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.408	102	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-16	106	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-10	109	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	109	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-5	109	151	No hit	No description
CDD	cd04873	5.00E-4	205	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
LNCFGGPQFA PEPNFDCLSE VCSPFAAAGL CGSSAPPAAA AAAAAAAHAA IHEEMSCGGA 60 SGGGRNICKA EQKQSAGTPE PLMLAASSCL ERKNARPKKA DGLPSKNLMA ERRRRKRLND 120 RLSMLRSVVP KISKMDRTSI LGDTIDYIKE LMARIKALQE EAEAESDPRN RPNQLGALKD 180 QLNPSETTLM RSSTKFDVER REGDTRVEVC CAAKPGLLLS MVSTLDALGL EIHQCVASCF 240 SDFGMQASCL EDKEQTELIS SEEIKQALFR NAGYGGRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	117	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092114.1	0.0	transcription factor bHLH61-like
Swissprot	Q9LSL1	4e-71	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A199UPK9	0.0	A0A199UPK9_ANACO; Transcription factor bHLH93
STRING	XP_008806159.1	4e-97	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-72	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Aco011985.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]