PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011934.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 470aa MW: 51201.3 Da PI: 6.556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011934.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.5e-05	363	395	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +Av+YI+ Lq Aco011934.1 363 DKITALQQIVSPF-----GKTDTASVLLEAVNYIRFLQ 395 7888999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.309	345	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0045	354	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-9	359	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-9	360	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.15E-5	363	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MAQHEATSEA SLSSSTSTST STTNWGDAHG NPLSSWTSMG QWLQAHYSPA AAAAAAASDD 60 DYTNVHAGLT MDSSSSSSAN ADISGETNLW NHVLLSTGLR GPSTQHNHDI GESFPEVIRR 120 KSFAPPETFD PAFDYLKKMD NNWEFASAPP LANSFGKQLN CYHRNTIEPE RMTDLSDLVS 180 NWSIAPPIPN IDDHHINAPS VRHFSLGPNI SHVKHAIPNS SPSYTRVDLS HYYNDVKGES 240 HYQDLISVDN SVIGLDNKLC GSGMMEEYSC SNARNISDLI SFSGNINASE VEFRAANSCS 300 KSSDPSAGNS TSLTRASSRS SGTSDAKKKR SEESSEALLK KSKRESSTAS SNKLQITKAK 360 LGDKITALQQ IVSPFGKTDT ASVLLEAVNY IRFLQEQVQL LSNPYMRSSS SKDHNAWGGG 420 LERKDKVDAQ LDLRSRGLCL VPVSCTSHVY RDITGPDYWN QPYRSCLYR*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MAQHEATSEA SLSSSTSTST STTNWGDAHG NPLSSWTSMG QWLQAHYSPA AAAAAAASDD  60
DYTNVHAGLT MDSSSSSSAN ADISGETNLW NHVLLSTGLR GPSTQHNHDI GESFPEVIRR  120
KSFAPPETFD PAFDYLKKMD NNWEFASAPP LANSFGKQLN CYHRNTIEPE RMTDLSDLVS  180
NWSIAPPIPN IDDHHINAPS VRHFSLGPNI SHVKHAIPNS SPSYTRVDLS HYYNDVKGES  240
HYQDLISVDN SVIGLDNKLC GSGMMEEYSC SNARNISDLI SFSGNINASE VEFRAANSCS  300
KSSDPSAGNS TSLTRASSRS SGTSDAKKKR SEESSEALLK KSKRESSTAS SNKLQITKAK  360
LGDKITALQQ IVSPFGKTDT ASVLLEAVNY IRFLQEQVQL LSNPYMRSSS SKDHNAWGGG  420
LERKDKVDAQ LDLRSRGLCL VPVSCTSHVY RDITGPDYWN QPYRSCLYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085632.1	0.0	transcription factor bHLH111-like isoform X1
TrEMBL	A0A199VN90	0.0	A0A199VN90_ANACO; Transcription factor bHLH111 (Fragment)
STRING	XP_008811082.1	1e-141	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7169	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	4e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco011934.1