PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011903.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 509aa    MW: 55526.1 Da    PI: 6.21
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011903.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-1782126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a +++G   W++I +++g ++t+ q++s+ qk+
      Aco011903.1  82 RERWTEEEHKKFIEALQLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 126
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-1676130IPR009057Homeodomain-like
PROSITE profilePS5129420.92577131IPR017930Myb domain
TIGRFAMsTIGR015576.4E-1680129IPR006447Myb domain, plants
SMARTSM007173.6E-1381129IPR001005SANT/Myb domain
PfamPF002491.6E-1482125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-982122IPR009057Homeodomain-like
CDDcd001672.41E-1084127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MKGKEEIKRA VVAFGEKKCP LGFGAMDAEE NNLNTISNLV THQAEIESNA SPAVGLQLTD  60
LGLCVDESIP KVRKPYTITK QRERWTEEEH KKFIEALQLH GRAWRRIEEH VGTKTAVQIR  120
SHAQKFFAKV ARDSSGNNCN STGTSTAIEI PPPRPKRKPL HPYPRKLGGT HIKGIPVLKQ  180
LEKSSMQNSA ICEQENRSPT SVLSTVGSEV FPSSCKSPIS SATGSSEQEN GGQSLTYSVN  240
EENRCPSTPG LTTEVLPTME SNQNDHPNME EASSEESPAP VFKLFGKTVI VTDASKPECP  300
KQSRVVEMES HQNRTNMELD ASSQQLSQSV LRGANPGSAE ATAWNLWPGG VPPFFYCLPL  360
AGDNVMAPTG APLPYWTLYG GLPYPLVQPE NAAYKQQDDK EAQREGSWTG SNTAPVSGRG  420
EGDQRADVVD SKGVENLSEE LIPASKLNPS ENSAFTPISG KNKSSRGFVP YRRCAVESEY  480
RRCAVESEMQ HAQMAIDDAE GEKTRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084551.10.0protein CCA1-like
TrEMBLA0A199UNH70.0A0A199UNH7_ANACO; Protein REVEILLE 1
STRINGXP_008794529.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-38MYB_related family protein