PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011886.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 777aa    MW: 87068.5 Da    PI: 6.0479
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011886.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23130231199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aco011886.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 223
                  99*****************************86555544..8************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco011886.1 224 LLLGIRRA 231
                  9****997 PP
2Auxin_resp117.41.2e-38256339183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vs+GmRf+m fete+ss rr++Gt++g+sdldp++Wp+S+Wrs+k
  Aco011886.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSIGMRFRMLFETEESSVRRYMGTITGISDLDPLHWPKSHWRSVK 339
                  79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48117259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-41123245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-21129230No hitNo description
SMARTSM010194.0E-24130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351130232IPR003340B3 DNA binding domain
PfamPF023621.5E-21130231IPR003340B3 DNA binding domain
PfamPF065072.0E-33256339IPR010525Auxin response factor
SuperFamilySSF542775.76E-6683760No hitNo description
PROSITE profilePS5174521.363686770IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MKLSTIGFGQ QEEEGGEEEK RCLNSELWHA CAGPLVCLPT VGTRVVYFPQ GHSEQVVAST  60
NKEVEGHIPN YPNLPPQLIC QLHNVTMRAD VETDEVYAQM TLQPLGPQEQ IDSFLSIEMG  120
IVSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDVEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVLPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLSKYVKAV FHTRVSIGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPLHW PKSHWRSVKV GWDESMAGER QPRVSLWEIE  360
PLTTYPMYPS LFPLRLKRPW QPGAPYSQEN KELESNSPMF LRGGSGERGI QPFNFLPFGV  420
NPWVQQRSEP SLLENELNQY QAMSSLAFQD VGGRNHLKQQ LLQYLPQEPC RISPLIQQQI  480
VHQALQQPVI CDQSHCASEC NFHSPQLQQT HTEIAEMSQI PNNRMKQQQS CFPSQLYEKT  540
ILADPIVNFS LASAPSSVQG ILGAEGNGNM LNLSRLGLSM ISPQNKHQDQ QQWEPKSKVS  600
HVASFGSSLE TENHQDQHNQ DLFGVSQCSP TVLPYPLPCQ ITSNVIGNDA SAVPYAVTSF  660
QNSLYGYMEE ASGLLQNGGE TDPQTGTFVK VYKSGSVGRS LDIARFSNCM ELREELGRMF  720
GIEGLLDDPL RSGWQLVFVD RENDVLLLGD DPWESFVNNV WYIKILSPED AEKAGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611936547393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084326.10.0auxin response factor 12-like isoform X1
RefseqXP_020084327.10.0auxin response factor 12-like isoform X1
RefseqXP_020084328.10.0auxin response factor 12-like isoform X1
RefseqXP_020084329.10.0auxin response factor 12-like isoform X1
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A199V5910.0A0A199V591_ANACO; Auxin response factor 12 (Fragment)
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]