PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011855.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 298aa MW: 32695.3 Da PI: 5.0557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011855.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	174	218	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P + K++ ae+ + A +Y++ Lq Aco011855.1 174 SAAARERRKRISEKTQELGKLIPGgN------KMNTAEMFQSAYKYVSFLQ 218 67889****************955......***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.509	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.17E-7	171	221	No hit	No description
SuperFamily	SSF47459	1.23E-10	171	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-8	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MALSYQSSWE TLAHLNPEIG GAFHEPQSEV ADALLGFFCD PIDASTFPID SLFDSSPESY 60 FYAETETETV PLPSLSHSSL SAPSILALTP DLYPPCDKFD LYRCPKRPRS CGDLFRPSNL 120 VFEQPGSYIR HIAAGAMMGG CRSSDFLSEF AAAPPLAVGM QERKAGSGCL SAQSAAARER 180 RKRISEKTQE LGKLIPGGNK MNTAEMFQSA YKYVSFLQAQ VGILSLMGSI QERGKVPLLV 240 EQQLQLLLES TTIQEKLYGE GNCLVPNKIV DTMAKDKEIK SNMLVSRDLD RFIESMR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093684.1	0.0	uncharacterized protein LOC109713852 isoform X1
Refseq	XP_020093685.1	0.0	uncharacterized protein LOC109713852 isoform X2
Refseq	XP_020093686.1	0.0	uncharacterized protein LOC109713852 isoform X2
Refseq	XP_020093687.1	0.0	uncharacterized protein LOC109713852 isoform X2
TrEMBL	A0A199VAS0	0.0	A0A199VAS0_ANACO; Transcription factor bHLH53
STRING	XP_008806162.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	5e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco011855.1