PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011844.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WOX

Protein Properties

Length: 208aa MW: 23006.9 Da PI: 10.5404

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011844.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.9e-18	23	83	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rkR+t+ ++ql++L+ F k p+++e++e+A +l ++e++V++WFqNrRa++++ Aco011844.1 23 RKRWTPLPKQLNALQGIFDKcRGVPNRKEIKEIALQLsqhgPISEANVSNWFQNRRARMRR 83 8****************96678***********999***************97 PP
2	Wus_type_Homeobox	76.1	5.1e-25	22	83	2	63
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ar+RWtP p+Q++ L+ ++++ Pn++ei++i+ +L+++G i+++NV +WFQNr+aR r+ Aco011844.1 22 ARKRWTPLPKQLNALQGIFDKCRGVPNRKEIKEIALQLSQHGPISEANVSNWFQNRRARMRR 83 689*********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-13	18	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.783	19	84	IPR001356	Homeobox domain
SMART	SM00389	1.1E-13	21	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-15	21	86	IPR009057	Homeodomain-like
CDD	cd00086	7.71E-14	23	85	No hit	No description
Pfam	PF00046	8.6E-16	23	83	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MLTGTPNYSD SPTKSGVHKI PARKRWTPLP KQLNALQGIF DKCRGVPNRK EIKEIALQLS 60 QHGPISEANV SNWFQNRRAR MRRSHADISH NSGAEPRTGT SKINCSLYRT PRMDQWMVRT 120 AHVANQEAGS GVGSYYQSND SLNYFAGIAR QNLLQQNGLS GSGSGTCSLK IFRFCELTAF 180 SPRRSFATIV VTWDALDHVF AFSDSAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094931.1	1e-124	WUSCHEL-related homeobox 8-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-23	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Aco011844.1