PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011836.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 926aa MW: 102998 Da PI: 6.1735

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011836.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.5e-28	613	663	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rkik++ Aco011836.1 613 EKTVSLQELRKHFAGSLKDAAKNLGVCPTTLKRICRQHGITRWPSRKIKKV 663 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-25	615	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.15E-22	820	912	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.4E-22	825	908	No hit	No description
PROSITE profile	PS51745	24.201	827	910	IPR000270	PB1 domain
SMART	SM00666	2.6E-22	827	910	IPR000270	PB1 domain
CDD	cd06407	6.39E-37	828	909	No hit	No description
Pfam	PF00564	8.7E-17	828	909	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MEDTALRANS LLGHLVSETV GDLDLIDELL SASDFLLQPD SSTSTSLFNS SAFSPAFEIS 60 DGSPNPILPL SDRQEEESEK SAHSTSTTST GENQIPPVIP PAQANELVLK SPQSDLSMSS 120 WFQPGYPIAS VTERLNRALD YIKRQRRDGD FLVQVWVPTT IGDRQVLTTC GQPFLFDANC 180 ERLMNYRLVS MKYQFSADEN SNEALGLPGR VFLRKVPEWT PDVRYFDSHE YPRVIHALYY 240 DIRGSIALPI FERDSRSCLG VVELVMTTQK VNYSSELESI CNALQAVDLA SSETSSVARV 300 KVNNNSYLAA IPEIQGVLKT VCDTHKLPLA QTWISCIQQG KRGSRHTKEN YKDCISTVDA 360 ACYIRDLTMA GFHQACSEHH LLRGQGVAGN AFMTNQPCFF SDITDFKKTE YPLSHHAKLF 420 NLKAAVAIRL RSVFTGNADF VLEFFLPIDC IDSEEQKLML NSLSITIQQV CKSLRVVTAK 480 EMKDEALLEA SELRYQDFLY DKAVPSGEET VGVSDDVSSW ITNIMETQQK RVQTAVSSRM 540 PVEFNKQDNE GFSITTRWDP SEVVLPGGNI LSGFEQNQDA PLTDATNWST AFPSKHSHLT 600 SEKAAEKRRT KTEKTVSLQE LRKHFAGSLK DAAKNLGVCP TTLKRICRQH GITRWPSRKI 660 KKVGHSLKKL QVVINSVQGP EGTFQLSSLY ESFTKSGWSD KDLHGNTSFP TLKDLPESSK 720 MNQLQEGTFT SHTSEPNSLS SSSCSQSSSS SLGCSSGIKQ YGSAPQLAIK QENEVENLSK 780 QALNQVELQV PTEETPVSTW KSQTNLFPSE HQPVENRSTL PNTRHDSLKV KAIYGDEKII 840 IRLQPNWGFY DLKHEILKRF NIAGTVPVDL KYLDDESEWV LLTCDADLKE CVDVYKSLSA 900 HAIKISVNHA AQPNIRASFG HTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MEDTALRANS LLGHLVSETV GDLDLIDELL SASDFLLQPD SSTSTSLFNS SAFSPAFEIS  60
DGSPNPILPL SDRQEEESEK SAHSTSTTST GENQIPPVIP PAQANELVLK SPQSDLSMSS  120
WFQPGYPIAS VTERLNRALD YIKRQRRDGD FLVQVWVPTT IGDRQVLTTC GQPFLFDANC  180
ERLMNYRLVS MKYQFSADEN SNEALGLPGR VFLRKVPEWT PDVRYFDSHE YPRVIHALYY  240
DIRGSIALPI FERDSRSCLG VVELVMTTQK VNYSSELESI CNALQAVDLA SSETSSVARV  300
KVNNNSYLAA IPEIQGVLKT VCDTHKLPLA QTWISCIQQG KRGSRHTKEN YKDCISTVDA  360
ACYIRDLTMA GFHQACSEHH LLRGQGVAGN AFMTNQPCFF SDITDFKKTE YPLSHHAKLF  420
NLKAAVAIRL RSVFTGNADF VLEFFLPIDC IDSEEQKLML NSLSITIQQV CKSLRVVTAK  480
EMKDEALLEA SELRYQDFLY DKAVPSGEET VGVSDDVSSW ITNIMETQQK RVQTAVSSRM  540
PVEFNKQDNE GFSITTRWDP SEVVLPGGNI LSGFEQNQDA PLTDATNWST AFPSKHSHLT  600
SEKAAEKRRT KTEKTVSLQE LRKHFAGSLK DAAKNLGVCP TTLKRICRQH GITRWPSRKI  660
KKVGHSLKKL QVVINSVQGP EGTFQLSSLY ESFTKSGWSD KDLHGNTSFP TLKDLPESSK  720
MNQLQEGTFT SHTSEPNSLS SSSCSQSSSS SLGCSSGIKQ YGSAPQLAIK QENEVENLSK  780
QALNQVELQV PTEETPVSTW KSQTNLFPSE HQPVENRSTL PNTRHDSLKV KAIYGDEKII  840
IRLQPNWGFY DLKHEILKRF NIAGTVPVDL KYLDDESEWV LLTCDADLKE CVDVYKSLSA  900
HAIKISVNHA AQPNIRASFG HTGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094190.1	0.0	protein NLP1-like
Refseq	XP_020094191.1	0.0	protein NLP1-like
Refseq	XP_020094192.1	0.0	protein NLP1-like
Refseq	XP_020094193.1	0.0	protein NLP1-like
Refseq	XP_020094194.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A199UKC1	0.0	A0A199UKC1_ANACO; Protein NLP1
STRING	XP_008812750.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aco011836.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]