PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011659.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 553aa    MW: 61256.6 Da    PI: 7.7985
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011659.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Aco011659.1  7 CGHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                 9***************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.4E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-10446No hitNo description
CDDcd002021.86E-15652No hitNo description
PROSITE profilePS5011411.134740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003208.2E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.8E-8281374IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGKHGPCGHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPLHA REAFENSEKY  60
EITKPKSTAL KPKEHKLPKK KQTIGVPENE SEMPYSDQNF QKIIEGDTSN RSCSGSASSF  120
SSSCAHIGTT DASELTGSAQ SNVWVSLVPS KKRTYVNRPK PSPLEKLTKD LYSIMHEQQS  180
SNLSATSEED LVYQNETPMG SFEIGYGSVL IRHPNSKSIE EESEASSIPV NNKSYNTDEA  240
YSGSATYPVH SESKGANVSL NAGSEKAKKC LAQAAQENAK RDKISHEKLQ ILRERDSPLS  300
SIDLKEVVNY ESFLKCFTLE EQQQLLKYLP SIDTAKTPES LRNMFGASQF VESLSCFQKL  360
LREGVFTLSF SGANAEECRI LKRLVLVNLT KSKWVEYYQP LKDKNCKKTR GKEMANCPNP  420
DISVKRPREG QNHSHTDVKG TMRSPKRIKP GCSNLLSKSD AISELVDDTD GFSPRSFFSS  480
PPDRISMLVP PNYTEDNSDQ DLLLDVPFNA SFPEAELLYR PSNQKSASSN SLAESGIAEC  540
EGSFSNKETK HW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093921.10.0GATA transcription factor 26 isoform X1
TrEMBLA0A199VNK90.0A0A199VNK9_ANACO; GATA transcription factor 26
STRINGXP_008786183.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-111GATA transcription factor 26