PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011649.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 491aa MW: 53033.2 Da PI: 11.8616

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011649.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	132	213	13	86
trihelix 13 arremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 ++r+++ rlrrg+l++++W+ev++++ + ++s++qC++k e+l+kr+++++ ++ k +s++ss++pyf+ l+ Aco011649.1 132 GYRDKWLRLRRGNLRAADWQEVADAVnsrcadLPTATTKSAVQCRHKVEKLRKRFRAERLRAAKLdpASPASSSWPYFRILH 213 689*********************99999989999******************99999855689999***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-13	133	215	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MPPSTSPPLL PPSLSSSLLS TTTTPPPPLS PLFPGVPLLP SIKRRPPWIP LLSLPPPPPP 60 PPAAAAAAAG DCVVTLPIAP PPPSSSRAPI PYPGSSVAAA AAAAARRRRR VGSASSASSS 120 RRLPPHGRAD RGYRDKWLRL RRGNLRAADW QEVADAVNSR CADLPTATTK SAVQCRHKVE 180 KLRKRFRAER LRAAKLDPAS PASSSWPYFR ILHSMDLSGP NPTPSPSHPS PSHVRPPPSP 240 TPSSSDDEEA AARRRNSSNT RSLHRLMSNG GATPSPAAVG GGISGLRFTI PKASRSKIVG 300 SRPGPTPSSP ASRFFKGYGA AAAAAAAARP VAEEIREKRA KIRRDGEADA AVREMAGALR 360 KLGDRFLRME QMKMEMAREI EKMRMEMELK RTEMVLDSQR CLVDAFAKRF FGKKRARDIV 420 IALLVNSLRH GELFWMNLVS STVIDGRAFR TRKRKESTTP QYNISIATVH CLQVVACNVF 480 QVAVTKRADR *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MPPSTSPPLL PPSLSSSLLS TTTTPPPPLS PLFPGVPLLP SIKRRPPWIP LLSLPPPPPP  60
PPAAAAAAAG DCVVTLPIAP PPPSSSRAPI PYPGSSVAAA AAAAARRRRR VGSASSASSS  120
RRLPPHGRAD RGYRDKWLRL RRGNLRAADW QEVADAVNSR CADLPTATTK SAVQCRHKVE  180
KLRKRFRAER LRAAKLDPAS PASSSWPYFR ILHSMDLSGP NPTPSPSHPS PSHVRPPPSP  240
TPSSSDDEEA AARRRNSSNT RSLHRLMSNG GATPSPAAVG GGISGLRFTI PKASRSKIVG  300
SRPGPTPSSP ASRFFKGYGA AAAAAAAARP VAEEIREKRA KIRRDGEADA AVREMAGALR  360
KLGDRFLRME QMKMEMAREI EKMRMEMELK RTEMVLDSQR CLVDAFAKRF FGKKRARDIV  420
IALLVNSLRH GELFWMNLVS STVIDGRAFR TRKRKESTTP QYNISIATVH CLQVVACNVF  480
QVAVTKRADR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794930.1	9e-72	trihelix transcription factor ASIL2-like
TrEMBL	A0A199W794	1e-174	A0A199W794_ANACO; Trihelix transcription factor ASIL2
STRING	XP_008794930.1	3e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-19	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aco011649.1