PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011500.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 529aa MW: 58430.9 Da PI: 9.3883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	197	220	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++++++ +LkrH r H Aco011500.1 197 YLCAVCGRRCPTRLDLKRHFRQlH 220 56*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.741	197	225	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0086	197	220	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
CDD	cd06167	8.12E-12	210	348	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.8E-4	211	337	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
CHGLFFEKAN TPKTPQPRDK TTSSPLMATT PSLTFLHLHL LLPSKPYYHP HSLPFSPRPL 60 PLPHRRRLLS SLTHRSLAAA AAAAASGDSS TSTTAAAAAA AAEVEMVRGG DGVWSARAPS 120 VVVLWDLDNK PPRGDPYAAA SALRSAASLL GRVLAVSAYA NRHAFSHLPS WVLAQRRDRR 180 RLDLLERRAP DPPPEPYLCA VCGRRCPTRL DLKRHFRQLH ERERLKKLAR LRSLKSKKKR 240 ARFRARFLSP DSKYDDAARQ LLTPRSGYGL AAELRRAGVA VRTVEDKPQA ADAALKRQMQ 300 HSMARGVDWL VLVSDDSGFA EMLRKAKEAE LRTVVIGDGR RALGRAADIW LPWARVESGD 360 IGEDALRSGR RRTNGEFGEL DQGLYSNLSF YKDGGNDAIE LDSDLDLDGV VDGIVARGSG 420 FGGSGISAFS EEELVDGLDE DEFYRTFGRS EPGKDLLWHS EDEDEDDDDD DGTFLSFLKG 480 RLFSLGTFTR LPSSVLRAHQ DNILSILRNY NELIVDAIRS SDSLHRNK*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

CHGLFFEKAN TPKTPQPRDK TTSSPLMATT PSLTFLHLHL LLPSKPYYHP HSLPFSPRPL  60
PLPHRRRLLS SLTHRSLAAA AAAAASGDSS TSTTAAAAAA AAEVEMVRGG DGVWSARAPS  120
VVVLWDLDNK PPRGDPYAAA SALRSAASLL GRVLAVSAYA NRHAFSHLPS WVLAQRRDRR  180
RLDLLERRAP DPPPEPYLCA VCGRRCPTRL DLKRHFRQLH ERERLKKLAR LRSLKSKKKR  240
ARFRARFLSP DSKYDDAARQ LLTPRSGYGL AAELRRAGVA VRTVEDKPQA ADAALKRQMQ  300
HSMARGVDWL VLVSDDSGFA EMLRKAKEAE LRTVVIGDGR RALGRAADIW LPWARVESGD  360
IGEDALRSGR RRTNGEFGEL DQGLYSNLSF YKDGGNDAIE LDSDLDLDGV VDGIVARGSG  420
FGGSGISAFS EEELVDGLDE DEFYRTFGRS EPGKDLLWHS EDEDEDDDDD DGTFLSFLKG  480
RLFSLGTFTR LPSSVLRAHQ DNILSILRNY NELIVDAIRS SDSLHRNK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661427	1e-168	KM661427.1 Ananas bracteatus clone 43539a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020090395.1	0.0	uncharacterized protein LOC109711658 isoform X1
TrEMBL	A0A199V322	0.0	A0A199V322_ANACO; Uncharacterized protein (Fragment)
STRING	XP_008776526.1	1e-147	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9806	32	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	3e-87	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aco011500.1