PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | AP2 | ||||||||
Protein Properties | Length: 777aa MW: 82883.7 Da PI: 6.6885 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.7e-11 | 307 | 363 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ ++ k + g ++ +++Aa+a++ a++k++g Aco011417.1 307 SIYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 363 57*******************433.44554535555.7799999*************98 PP | |||||||
2 | AP2 | 46.5 | 9.1e-15 | 406 | 457 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Aco011417.1 406 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 457 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.20E-18 | 307 | 373 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-14 | 307 | 373 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-8 | 307 | 363 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 308 | 372 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-22 | 308 | 377 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.174 | 308 | 371 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 309 | 320 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 406 | 457 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 406 | 467 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.72E-24 | 406 | 467 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 407 | 465 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-18 | 407 | 466 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 407 | 471 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 447 | 467 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MASMNNWLAF SLTPQDQLNP TSQPTHPTDS PPAAVARFIT GDDVPSDCYG LSADTASEPP 60 LAIPTLIRPD ASYGILEDFN RNNHQPQDWN MKGLDFKGGS SELSMLVGSS SIKNSNNMAD 120 GDVPKLEDFL GGNSFADHDH QKISSGLPGN YDSSSGAYLF SNSFLQVTDT AMVTTSNGGL 180 MSGTNGGTNT STIGLSMIKT WLRNHPAPSQ QPENNKGNID VGDCGGGATV GNINGGSANS 240 QSLSLSMSMG SQSSSALPLV TVGASGGGES SSSEGKQKAS GGGLDAQTGA IETAPRKSID 300 TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RKEGQSRKGR QGGYDKEDKA ARAYDLAALK 360 YWGPTTTTNF PVSNYEKELE EMKHMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW 420 QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKSILEGSTL 480 PIGAAAKRLK EQQASENGGE ASVNGRMRTA AEVDDHRHQL MTDAFSAYTS QQQQQHHHHH 540 GGWPTIAFQQ PQPLGFHGHY PYGQARVWCK QEQDAAAAHS LQDFHQLHLS STTTHNFLQP 600 AAAAAAALHN LISLDSSSLE HSTGSNSIIY NNNGNVSASS GSYHGVVGDG HGGGFMVPIS 660 TVVADHQSHH ATAANQGSCT ISSFGDVDEG KHMLYHENMF GNDPDPYAAS RNSFYLSQNS 720 LLAVGNNNWM SSTAAAAAAS TQAVASTQAV ASRANNNNMA VCNNGGAPLF TVWNDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093563.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM | ||||
Swissprot | Q8LSN2 | 1e-132 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A199VA40 | 0.0 | A0A199VA40_ANACO; AP2-like ethylene-responsive transcription factor PLT2 (Fragment) | ||||
STRING | XP_008804192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-123 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco011417.1 |