PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011388.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 888aa MW: 97838.6 Da PI: 7.3759

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011388.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.6	3.3e-25	551	601	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+ky+s+++kdAAk++gvc+T+LKriCR +GI+RWP+R i+++ Aco011388.1 551 EKNISLSVLQKYYSGTLKDAAKSIGVCPTTLKRICRLNGISRWPSRTISKV 601 79**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.573	535	621	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-22	553	601	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-22	787	869	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.5E-24	788	867	No hit	No description
PROSITE profile	PS51745	24.219	788	870	IPR000270	PB1 domain
SMART	SM00666	5.5E-22	788	870	IPR000270	PB1 domain
CDD	cd06407	2.66E-30	789	869	No hit	No description
Pfam	PF00564	1.4E-17	789	869	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MDQFPPFSQG NGTPMSEDVF NYSALMNIET FTELCNPSIS DRLLLSFNYS SAQPKNGTDP 60 YLPSQSFDPS NCTDSPHIRP QNANLHSRCS LNSIEITNSS KDRSGDARDE NSIVPRSFAG 120 ITLVEKLLTA LSLFKKSSGG GILAQVWMPM KVGDEYILST SEQPYLLDQI FSGYREVSRS 180 FTFSWKEAPG MSPGLPGRVF ISGMPEWTSN IAFYHPIEYL RVNHALAHEV RGSLALPIFD 240 THDSSCCAVL ELVTKKEKAD FDADIDSVCG ALEAVNLRSV KTCARARKQN LTQGQKSAFT 300 EILDVLRVVC HAHMLPLALT WVPTRQFGQT LSETMRSSIG ETSSLAENNT MLSVQESSCY 360 VNDRRMLGFL HACSEHNVQK GQFIAGKAIQ SKQPIFAPDV KVYGVQHYPF AHHARKFGLH 420 AAVAIRVQST FTGRDDYVLE FFLPVNCKGS SEQQLLLNNL AGTLQRICRS LRTVSGDEKI 480 RFNLYKEGID KGLGSLKLGN TSASGFQSVV DSTTLNFEIQ HVGHGKEINA SHDKKKSGPM 540 RHQKKMRSVV EKNISLSVLQ KYYSGTLKDA AKSIGVCPTT LKRICRLNGI SRWPSRTISK 600 VNHSMKKIET VINSVPGMAG TLMFDPSTGN LTKDLGFPEK QTTMTSNSLG ISEQQQFPVR 660 LEENCLASGN PMANPSEPNF CQIEATSSHD LPIRFVNECG SSEGPSNAAN KRSNRAVSKL 720 SNLGLEVAEN MEIGIDTNNK NSERITEQNH LTNSDTTDSS SGSASSCPTS KKDSDKNVTP 780 ADINCGLAIR IKATYKEDTV RFKFFPSMGW YQLTEEIGKR FKLSTGTFQL KYLDDEGEWV 840 LLMNNSDLQE CVEILESMGT ESLRIMVRDL PFSAGSSGSS NSLLLEP*

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MDQFPPFSQG NGTPMSEDVF NYSALMNIET FTELCNPSIS DRLLLSFNYS SAQPKNGTDP  60
YLPSQSFDPS NCTDSPHIRP QNANLHSRCS LNSIEITNSS KDRSGDARDE NSIVPRSFAG  120
ITLVEKLLTA LSLFKKSSGG GILAQVWMPM KVGDEYILST SEQPYLLDQI FSGYREVSRS  180
FTFSWKEAPG MSPGLPGRVF ISGMPEWTSN IAFYHPIEYL RVNHALAHEV RGSLALPIFD  240
THDSSCCAVL ELVTKKEKAD FDADIDSVCG ALEAVNLRSV KTCARARKQN LTQGQKSAFT  300
EILDVLRVVC HAHMLPLALT WVPTRQFGQT LSETMRSSIG ETSSLAENNT MLSVQESSCY  360
VNDRRMLGFL HACSEHNVQK GQFIAGKAIQ SKQPIFAPDV KVYGVQHYPF AHHARKFGLH  420
AAVAIRVQST FTGRDDYVLE FFLPVNCKGS SEQQLLLNNL AGTLQRICRS LRTVSGDEKI  480
RFNLYKEGID KGLGSLKLGN TSASGFQSVV DSTTLNFEIQ HVGHGKEINA SHDKKKSGPM  540
RHQKKMRSVV EKNISLSVLQ KYYSGTLKDA AKSIGVCPTT LKRICRLNGI SRWPSRTISK  600
VNHSMKKIET VINSVPGMAG TLMFDPSTGN LTKDLGFPEK QTTMTSNSLG ISEQQQFPVR  660
LEENCLASGN PMANPSEPNF CQIEATSSHD LPIRFVNECG SSEGPSNAAN KRSNRAVSKL  720
SNLGLEVAEN MEIGIDTNNK NSERITEQNH LTNSDTTDSS SGSASSCPTS KKDSDKNVTP  780
ADINCGLAIR IKATYKEDTV RFKFFPSMGW YQLTEEIGKR FKLSTGTFQL KYLDDEGEWV  840
LLMNNSDLQE CVEILESMGT ESLRIMVRDL PFSAGSSGSS NSLLLEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104977.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A199V9Y9	0.0	A0A199V9Y9_ANACO; Protein NLP2
STRING	XP_008788345.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	1e-180	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aco011388.1