PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 421aa MW: 49214.8 Da PI: 10.4235 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 3.1e-13 | 146 | 187 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r + kR++g+ KK +ELS+LC++++ ++ ++++g + +++ Aco011374.1 146 RRECYRKRKEGLKKKIFELSTLCGVNAFLVCYGPSGDVVTWP 187 566799***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-4 | 130 | 188 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.503 | 130 | 190 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-17 | 132 | 223 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-13 | 143 | 186 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MPRSKEGVGK KGKRRRSSDR FSTPPPPPPL PPLGRGRRRR GQKKEREREK REGEGKKRRR 60 GRRRKEKKQR PLPLLRRYRR RLGEGEGEGE GEGEREVGRR RRGKKRREKE QRPFPPLRRH 120 RLGEGEGEGR RRGRRRERRR RCDEKRRECY RKRKEGLKKK IFELSTLCGV NAFLVCYGPS 180 GDVVTWPPDD HALRELVEKY ESLTAETKAK HNLNMSSYLL SEIQKQQKRL NKIMAADDLL 240 TRWNGRRLDD MTEVELQELL QLLDETMLKR ARRRITYLYS EKCFDESLES GPCFTPPTPF 300 ADEDVNFAHL YGGKRFDESL ESGGAKTVPC FTYPTTPLAD EDDNVTSYYS GKCSNESVES 360 SHAETIPWLT YPTTLLADED DGDMFKPYRD PFDWLFSRRR ALGGSELRQE QCVLPFGLQH 420 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 41 | GRGRRRRGQ |
2 | 54 | 60 | GKKRRRG |
3 | 60 | 68 | GRRRKEKKQ |
4 | 61 | 66 | RRRKEK |
5 | 63 | 81 | RKEKKQRPLPLLRRYRRRL |
6 | 100 | 107 | RRGKKRRE |
7 | 103 | 108 | KKRREK |
8 | 129 | 139 | RRRGRRRERRR |
9 | 130 | 138 | RRGRRRERR |
10 | 133 | 146 | RRRERRRRCDEKRR |
11 | 138 | 153 | RRRCDEKRRECYRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080835.1 | 1e-153 | MADS-box transcription factor PHERES 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14351 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27050.1 | 1e-10 | AGAMOUS-like 101 |
Link Out ? help Back to Top | |
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Phytozome | Aco011374.1 |