PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26960.5 Da PI: 9.6899 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.6 | 2.9e-27 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krien++ rqvtf+kRrng+lKKA+ELSvLCdae+a+++fs +g+ly+ Aco011341.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEIALVVFSARGRLYD 56 79********************************************95 PP | |||||||
2 | K-box | 111.5 | 8.7e-37 | 73 | 169 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s++++e + ++++qqe+akL+ +i+ Lq+ +Rhl+Ge+L++Ls+keL+qLe++Le+++++iRskK+e l+++i+++qk+e +lq++n++Lr+k++e Aco011341.1 73 NSSSAVEINSHQYYQQEAAKLRHQIQILQNANRHLMGESLSNLSVKELKQLENRLERGITRIRSKKHEQLFAEIDYMQKREADLQNDNMYLRAKIAE 169 444459999*************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.27E-27 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.38E-38 | 2 | 66 | No hit | No description |
PRINTS | PR00404 | 7.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-28 | 79 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.96 | 83 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEIALVVFSA RGRLYDVRST 60 IERYKKACSN NSNSSSAVEI NSHQYYQQEA AKLRHQIQIL QNANRHLMGE SLSNLSVKEL 120 KQLENRLERG ITRIRSKKHE QLFAEIDYMQ KREADLQNDN MYLRAKIAES ERAQQASMVS 180 GGAELDTLPT FDSRNYYHVN MLEAASHHYS QHQDQPTLHL GYEIKANQGS KNLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
5f28_A | 7e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 7e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 7e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 7e-18 | 1 | 60 | 1 | 60 | MEF2C |
6c9l_A | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020094464.1 | 1e-163 | MADS-box transcription factor 21-like | ||||
Swissprot | Q8RU31 | 1e-109 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A199UZQ4 | 1e-148 | A0A199UZQ4_ANACO; MADS-box transcription factor 21 (Fragment) | ||||
STRING | GSMUA_Achr7P23690_001 | 1e-135 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-96 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco011341.1 |
Publications ? help Back to Top | |||
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