PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011242.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35321 Da PI: 8.1183 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Aco011242.1 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 67 | 154 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..........................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................................tWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ +W++Ia ++ gRt++++k++w+++ Aco011242.1 67 RGNFTDEEDELIIKLHGLLGNKydsllllyyxtvsqvpvtiwlasmrkelptpvdelspprpqaRWSLIAGQLP-GRTDNEIKNYWNTH 154 89************************************************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.433 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.38E-22 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 9.303 | 62 | 155 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-11 | 66 | 157 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-9 | 67 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 69 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.72E-7 | 69 | 155 | No hit | No description |
Pfam | PF00249 | 1.7E-6 | 127 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 129 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDEEDELIIK LHGLLGNKYD SLLLLYYXTV SQVPVTIWLA SMRKELPTPV 120 DELSPPRPQA RWSLIAGQLP GRTDNEIKNY WNTHIKRKLI SRGLDPQTHR PLSTAAAAAT 180 ATAATAIAVA TPSLHREVTP MELKPSTDLS TEDCCQHSGG TANLDEDRCP DLNLDLSISL 240 PNCSSPKTSA SSESLTPPNA PQEVTTPISL IPTYSTTPIC LCYHLGFQSK KPCNCQTSKN 300 PHVFRYYRPL EEGQYIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 14 | 159 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083437.1 | 0.0 | myb-related protein 308-like isoform X1 | ||||
Refseq | XP_020083442.1 | 0.0 | myb-related protein 308-like isoform X2 | ||||
TrEMBL | A0A199VQ47 | 0.0 | A0A199VQ47_ANACO; Myb-related protein 308 | ||||
STRING | XP_008799190.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 7e-81 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Aco011242.1 |