PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 515aa MW: 56173 Da PI: 6.706 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 9e-07 | 262 | 283 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Aco011214.1 262 FCSICGKGFKRDANLRMHMRGH 283 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.69E-5 | 259 | 286 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 261 | 288 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 261 | 283 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 262 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 65 | 310 | 343 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 26 | 348 | 370 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MDHKLKGTSE ASSKPSSLMP GNHFNPANLA YGFAQSPKTQ SQALPSYHPD NKMKITNPLE 60 SSQTVSTPIL DWDPRGMLSN LSFLEQKIHQ VQDIVRQIIS QEGQFSNRAG ELAAQQQLVT 120 ADLTCIIIQL ISTAGTLLPS IKNSLLSTNP MLGAPTAAFG SNPNLNTNQQ RNEVVTPEMN 180 KGSEYEELIK SLSASGEDSD ELMLKCLDAG RAGGADERIP IDDHDLKESD DGGAADGENL 240 PPGSYEVLQL EKEEILAPHT HFCSICGKGF KRDANLRMHM RGHGDEYKTP AALAKPARGP 300 ASEPALVRRY SCPFAGCKRN KEHKKFQPLK TILCVKNHYK RSHCDKSYIC SRCNTKKFSV 360 IADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHVALFQGH TPALPVDLPI DDVKTPNNNN 420 SNNTPELSRG GEAVNGLGGN MSSYGFPSST SDDINSIDIK GVDDSRGYFS PMNFDSCNFG 480 VLDDFPRPAF DVAENPFSFL PSGSCSFTQR NGES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM664693 | 4e-68 | KM664693.1 Ananas bracteatus clone 49680 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092292.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A199W0Q9 | 0.0 | A0A199W0Q9_ANACO; Zinc finger protein STOP | ||||
STRING | XP_008795575.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-167 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco011214.1 |
Publications ? help Back to Top | |||
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