PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28129.4 Da PI: 5.2108 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++vk +G ++W++I+ ++ gR++k+c++rw + Aco011071.1 13 KGSWSPEEDAMLTQLVKDHGARNWSLISDGIP-GRSGKSCRLRWCNQ 58 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.4e-17 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v a++q+G++ W++Iar ++ gRt++ +k++w++ Aco011071.1 67 PFTPAEDAAIVAAHAQFGNK-WAAIARLLP-GRTDNAIKNHWNST 109 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.211 | 8 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-16 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-15 | 15 | 57 | No hit | No description |
PROSITE profile | PS51294 | 24.779 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-12 | 67 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 67 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVAEERQQQQ RIKGSWSPEE DAMLTQLVKD HGARNWSLIS DGIPGRSGKS CRLRWCNQLS 60 PDVHHRPFTP AEDAAIVAAH AQFGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRRRHAAAN 120 ATAPDLAGAD DSNKRLCIRD DDGDPADEEV EAAVVAARIP PPPPPLVITA DPVTSLSLSP 180 PGEAASSSGG AGEAERRSEV PATMTAMRDM CFVTIMRQMI AEEVKSYINQ LRMEDNDGDC 240 CRNSVAVKSE PEFNDED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-36 | 12 | 113 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-36 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-36 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086015.1 | 0.0 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 4e-53 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A199VX91 | 1e-148 | A0A199VX91_ANACO; Transcription factor MYB44 | ||||
STRING | XP_010253806.1 | 4e-74 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 3e-54 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Aco011071.1 |
Publications ? help Back to Top | |||
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