PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 365aa MW: 38334.6 Da PI: 7.9423 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.2e-40 | 30 | 91 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e++lkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Aco011022.1 30 PEQSLKCPRCESTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNKRSSS 91 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 28 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.422 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGSSTLPLEE VLASCPKPQQ QERKVVRPQP EQSLKCPRCE STNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTK GGSLRNVPVG GGCRKNKRSS SNSSSNSSST SPSNSSSSSK RPQDHHQTHL 120 MITTSSVITP SLSTLFPPHQ LSYDPSDLSL AFARLHKQPA AAPGELGLAH HEHDPSFLLL 180 ANPNPNPNPN PNPSPGCMIP PYSGPGFLDI LRGGFLDTIT PHPHPNGFNS LFYGWGGNNG 240 NGLQEVEGVG GGEKEEVVVP LNGGLMGGGA AAAAAAAAAT ATATATTTTA TTVTTSQLEP 300 CRALDHGGES KNILMGGLQW QLGGDGNLAV DSAGRDFWNV NGVASSSSST SCTSWHGIIN 360 SSLM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085850.1 | 0.0 | dof zinc finger protein PBF-like | ||||
TrEMBL | A0A199UTZ3 | 0.0 | A0A199UTZ3_ANACO; Dof zinc finger protein DOF5.3 | ||||
STRING | XP_008789033.1 | 4e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-36 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Aco011022.1 |