PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010976.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 278aa    MW: 31257.6 Da    PI: 5.3003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010976.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-143686148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv +v ++G ++W+  a+  g   ++Rt+k+c++rw +yl
      Aco010976.1 36 KGPWTEQEDLQLVWLVGLFGERRWDFLAKVSGlrgLNRTGKSCRLRWVNYL 86
                     79***********************************************97 PP

2Myb_DNA-binding422.2e-1392139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      rgr+T++E+el+++++ ++G++ ++ I  t    gRt++++k++w++++
      Aco010976.1  92 RGRMTPQEEELILELHSKWGNR-FDPIKTTRKlPGRTDNEIKNYWRTHM 139
                      89********************.66666666666************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.493190IPR017930Myb domain
SuperFamilySSF466892.43E-2534135IPR009057Homeodomain-like
SMARTSM007171.4E-123588IPR001005SANT/Myb domain
PfamPF002494.7E-133686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-193793IPR009057Homeodomain-like
CDDcd001673.38E-83886No hitNo description
SMARTSM007172.6E-1091141IPR001005SANT/Myb domain
PROSITE profilePS5129414.76191143IPR017930Myb domain
PfamPF002491.3E-1092138IPR001005SANT/Myb domain
CDDcd001673.45E-794139No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1994142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSLQGHEGPE PAGLETNTEN EKAAMVAAKK GGEIRKGPWT EQEDLQLVWL VGLFGERRWD  60
FLAKVSGLRG LNRTGKSCRL RWVNYLHPGL KRGRMTPQEE ELILELHSKW GNRFDPIKTT  120
RKLPGRTDNE IKNYWRTHMR KKAQELRKTS SPSSSSPSSS SSSSTSSSSN TSSASEGPLD  180
AGAEKHECES NTREQSNSSI EEDLKVYPMD QLWNEIAASE PFNNTFSFEE YKNEGVCSTS  240
SGPSMPSPIW EYSTESLWRI NDDEEELKMF IPDLAFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23331431105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085908.11e-155transcription factor MYB59-like
SwissprotQ4JL845e-72MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A199V5H21e-176A0A199V5H2_ANACO; Transcription factor MYB59
STRINGXP_008795797.16e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-68myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]