PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31257.6 Da PI: 5.3003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 36 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +v ++G ++W+ a+ g ++Rt+k+c++rw +yl Aco010976.1 36 KGPWTEQEDLQLVWLVGLFGERRWDFLAKVSGlrgLNRTGKSCRLRWVNYL 86 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 92 | 139 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 rgr+T++E+el+++++ ++G++ ++ I t gRt++++k++w++++ Aco010976.1 92 RGRMTPQEEELILELHSKWGNR-FDPIKTTRKlPGRTDNEIKNYWRTHM 139 89********************.66666666666************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.49 | 31 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-25 | 34 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 35 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-13 | 36 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 37 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.38E-8 | 38 | 86 | No hit | No description |
SMART | SM00717 | 2.6E-10 | 91 | 141 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.761 | 91 | 143 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-10 | 92 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-7 | 94 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 94 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MSLQGHEGPE PAGLETNTEN EKAAMVAAKK GGEIRKGPWT EQEDLQLVWL VGLFGERRWD 60 FLAKVSGLRG LNRTGKSCRL RWVNYLHPGL KRGRMTPQEE ELILELHSKW GNRFDPIKTT 120 RKLPGRTDNE IKNYWRTHMR KKAQELRKTS SPSSSSPSSS SSSSTSSSSN TSSASEGPLD 180 AGAEKHECES NTREQSNSSI EEDLKVYPMD QLWNEIAASE PFNNTFSFEE YKNEGVCSTS 240 SGPSMPSPIW EYSTESLWRI NDDEEELKMF IPDLAFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-23 | 33 | 143 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085908.1 | 1e-155 | transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 5e-72 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A199V5H2 | 1e-176 | A0A199V5H2_ANACO; Transcription factor MYB59 | ||||
STRING | XP_008795797.1 | 6e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-68 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Aco010976.1 |
Publications ? help Back to Top | |||
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