PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010919.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 395aa    MW: 42710.6 Da    PI: 9.2183
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010919.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17177226155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a +k++g
  Aco010919.1 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAVNKFRG 226
                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-8177226IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-15177235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-16178235IPR001471AP2/ERF domain
CDDcd000189.02E-22178236No hitNo description
PROSITE profilePS5103217.082178234IPR001471AP2/ERF domain
SMARTSM003803.0E-30178240IPR001471AP2/ERF domain
PROSITE profilePS5103212.102223304IPR001471AP2/ERF domain
SMARTSM003801.7E-11252310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-10268304IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-8268305IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
FDPSPTTPLF DPFPTPRRFG PSHTPAASIA PRLPPLRSLP RLLFDPSSVL LLGVEPPSAH  60
GRDEVLGLGA AGELVLEILH DEGVGGGAGE GGGDCEAQLE ELQGGGRWSG GGNGRGVRRG  120
GWGREGAGRD DAAWSSAAVA PPSSGDSRRI DLAFGQRTVK AQQQVKKSRR GPRSRSSQYR  180
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA VNKFRGVDAD INFNLSDYDD  240
NLKQMRNLTK EEFVHILRRQ STGFARGSSK YIYLGLFDSE IEAARAYDKA AIRCNGREAV  300
TNFEPSFYEG EILPEPENEL STKSPLSPYH QSSILRYPVS PYAQAPGPTP TILSSPGKSF  360
PSSPANHIVI GSGSPTSHRG MQLDRVPMQL GRVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104111GGRWSGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-69AP2 family protein