PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco010782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 902aa MW: 99206.5 Da PI: 4.8904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4.2e-12 | 57 | 92 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l +av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l Aco010782.1 57 LCRAVQRFKGKNWKKIAECFP-DRTDVQCLHRWQKVL 92 789******************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 98 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Aco010782.1 98 KGPWSKEEDDIIVEMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 144 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 44.5 | 3.5e-14 | 150 | 192 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E+ l++a+ +G++ W+ + ++ gRt++ +k++w+ Aco010782.1 150 KEAWTQDEEIALIHAHSIYGNK-WAELTKFLP-GRTDNAIKNHWN 192 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.422 | 53 | 92 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 53 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-13 | 54 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-4 | 54 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-8 | 54 | 92 | No hit | No description |
Pfam | PF00249 | 1.4E-9 | 57 | 92 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 31.79 | 93 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 95 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-18 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 98 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.74E-16 | 100 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-27 | 105 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 148 | 199 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.972 | 149 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-12 | 150 | 193 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 902 aa Download sequence Send to blast |
MASDKGKGSK RGEASSSSTA AHGGSGQEVS RKRPLGTPYT IHHLVVITID IAKDAVLCRA 60 VQRFKGKNWK KIAECFPDRT DVQCLHRWQK VLNPDLVKGP WSKEEDDIIV EMVNKYGPKK 120 WSTIAQALPG RIGKQCRERW HNHLNPAINK EAWTQDEEIA LIHAHSIYGN KWAELTKFLP 180 GRTDNAIKNH WNSSVKKKVD SYRAMGLLSQ FHGLPHPENS PHFMSLSALA RQNSEDSGFK 240 DRQEVEDSSE CSQVSSMLMG YSQTDSKMDF IDQMCDDLQL GEDVNENNTH MDVDMAADEL 300 PDYESLGDET HTSLELPEAS HCSPLHFENY EVDSTLFPNA VELNMPIPEA DFPSESIVKS 360 DTWQDSMQGH ITATNVVNVD ILSGRNCQTN AYQVYAVSSS SMVDISYCQS LMNLVPPSFI 420 CPSEGNLVND IKTIGIPVGP ENSEIICVPA DIGLESDAPR QTFMEMMACG SPNSFGKTTP 480 LNKKQVVSTE EQRDGGSLFY EPPRFPGLDI PFVSCDLAFS GDLQQDYSPL GIRKLMMPST 540 YSLWDSPPKD GSPDAFLKSA AKSFVCTPSI MKKRQRELLS PLADKKSSTT NGEAFDSGPS 600 SCSADGDVPS SEYHKRKSEL SSIEKGNLGD VSVSGHEKGP NTAEQDGNAT DKEQTIGILI 660 ERNLNDLLFS PGHVGQYLKE QTSRSSNSNS NKVQSNDNDC GDQSSLPSTS AHGTSANSID 720 ILVEKRRPSI NVDFESLNIF ADTPGIKRGI ESPSAWKSPW FVNSLLPVQG HRIDTDVLYQ 780 DMGLFVSPGD RTYDAIGLMK QLSEQTAALV AEAHEVLASG NREASLDGRN SDKENLQNEN 840 IEPENKIETH QMPPNVMAEA RVLDFSGCAT PVRRAETEKT DWVGTSISSS SPSSYLMKNC 900 R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-63 | 53 | 199 | 13 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-63 | 53 | 199 | 13 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097051.1 | 0.0 | uncharacterized protein LOC109716141 isoform X1 | ||||
TrEMBL | A0A199VMW2 | 0.0 | A0A199VMW2_ANACO; Myb-related protein 3R-1 | ||||
STRING | XP_008795071.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.1 | 2e-90 | Homeodomain-like protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco010782.1 |