PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010678.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 233aa    MW: 25565.2 Da    PI: 9.2648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010678.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-155197354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+e+ErrRR+riNs +++Lr+++P +      K++Ka+iL ++++++k+L
  Aco010678.1 51 KNHSEAERRRRERINSHLATLRTMVPCS-----DKMDKAAILAQVINHVKEL 97
                 58*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.244897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-55198No hitNo description
PfamPF000102.9E-135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1552103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1652100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1354103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.3E-6135189No hitNo description
CDDcd048734.34E-6136204No hitNo description
SuperFamilySSF550212.29E-5136218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
FVMGTVPVGV GGVRVTESSS ASLVVDDGER VGKKGGVGRG APEAKTAMAL KNHSEAERRR  60
RERINSHLAT LRTMVPCSDK MDKAAILAQV INHVKELKSK AVEISKGYNI PSDTDEVRVE  120
AEANAVNSGS FYIRATLCCE DRPELFAELR QTLDTLQLKL IRAEISTLSG RVKNILIMRC  180
DDNANDIDRH IYTASVHQAL KSVLDRVNST VDFYPRAKRR RISMFESSCS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661ERRRRE
2217221KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844487e-31BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097983.11e-169transcription factor bHLH30-like
TrEMBLA0A199V2061e-108A0A199V206_ANACO; Transcription factor bHLH51
STRINGXP_008783898.17e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-37bHLH family protein