PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010666.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 533aa    MW: 57698.6 Da    PI: 5.3981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010666.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.28.4e-36179266288
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++++ ++ ++  ++s + sa+++  +
  Aco010666.1 179 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLAELPAWHPASSaPPDSLRHSAEHQFGD 266
                  79**************************************************************665554444666666666654433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-31179244IPR005333Transcription factor, TCP
PROSITE profilePS5136933.203181239IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDSDVENRVV RFHECGEEEE EEEEEEGKRG EKDLDPRRAH YHPIPNPRES ERDHESDDAD  60
EPKEEEPQQN LQYQRQQEQE QEQQQEEEEE EQAASQASRR RSYFRSISAP SSSAATAATA  120
FSSDYSILAE RAGDAHGYYH QLQFQQQQQQ QQQQLVVSSI GGGGGEIVEV QGGHIVRSTG  180
RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK NAKDAIDKLA  240
ELPAWHPASS APPDSLRHSA EHQFGDAGKR PIADNSPPFD FGDSGARGGG GNGGIGGGSS  300
STSFLPPSLD SDAIADTIKS FFPMGAGASA TAAASAPSIG FHSYHGQSQD LRLSLQSFQD  360
PIFPNPHSAQ PPTAPSAAAH HQALFSANLA AAFDPGSAVW SEPHQRLVHC WNVAEPSAFN  420
MPPPPPPQPP PPPMHPSVVL GQNQFFIQRG PLQSSNSPSF RAWAAEPAEA STAAAAEHHH  480
RMHQGLGLNP SVPAFGFASG AGFSGFRIPA RIQGEEEHDG DKPPSASSVS HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20186239154Putative transcription factor PCF6
5zkt_B2e-20186239154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626130.0KM662613.1 Ananas bracteatus clone 46469c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098055.10.0transcription factor PCF5-like
SwissprotQ8LT072e-89PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A444GC861e-117A0A444GC86_ENSVE; Uncharacterized protein
STRINGXP_008784441.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.18e-63TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3