PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010532.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 181aa MW: 19270.8 Da PI: 10.2228 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 105.3 | 3.3e-33 | 23 | 79 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC stntkfCyynny++sqPr++C+aC+ryWt+GGalrnvP Ggg +k+ Aco010532.1 23 PPLQCPRCGSTNTKFCYYNNYNTSQPRHYCRACERYWTHGGALRNVPPGGGGGGKKR 79 5689*******************************************9887654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 26.618 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-30 | 25 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-17 | 27 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAAEARKPKQ QQQQQQRQAP HPPPLQCPRC GSTNTKFCYY NNYNTSQPRH YCRACERYWT 60 HGGALRNVPP GGGGGGKKRA AKSRTADPNF PTPNSSKLPK LNIIADAAAA AAAAMAPPPP 120 TPIFHGGIEG LALRPAAINP GEFFGGLRGF QPYSNNNMNF PHVPPHGAVN NMCGNCLTGL 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092865.1 | 8e-83 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A498INY7 | 6e-28 | A0A498INY7_MALDO; Uncharacterized protein | ||||
STRING | XP_009352402.1 | 5e-29 | (Pyrus x bretschneideri) | ||||
STRING | XP_009352403.1 | 5e-29 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-23 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco010532.1 |