PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | TCP | ||||||||
Protein Properties | Length: 254aa MW: 25542.6 Da PI: 11.053 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.3 | 1.6e-39 | 34 | 150 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa.k 96 +gkk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++++sss sas g ++sa+ Aco010326.1 34 TGKKAPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTSSSSSASAS--LRGpaP-SASAPfI 128 68*******************************************************************8884444444444..222222.2222223 PP TCP 97 skksqksaasalnlakesrakara 120 k+ +s+a + +ke a a a Aco010326.1 129 LGKRLRSDA--DAADKEDAAAAAA 150 333333333..3444444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.992 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.8E-33 | 40 | 115 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTAPDGATNG KRREREKGMV GKRNGNGNGN GAVTGKKAPS KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTSSSS SASASLRGPA 120 PSASAPFILG KRLRSDADAA DKEDAAAAAA AASAVGVGVG IGPSGGFWAL PARPDFGQIW 180 SFAAAAAAAP EMVVPPASFS GRFAAAAAQP VGEASAARVG NYLPIAQGHL NLLATLSGAP 240 AATSAGRNED ESR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM667888 | 4e-94 | KM667888.1 Ananas bracteatus clone 53334c microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080035.1 | 1e-163 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 2e-73 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A199VJ86 | 1e-119 | A0A199VJ86_ANACO; Transcription factor TCP7 | ||||
STRING | XP_008787053.1 | 3e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-45 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco010326.1 |