PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 213aa MW: 23278.7 Da PI: 5.5465 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.1 | 3.4e-32 | 29 | 85 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprC+s+ntkfCyynnys sqPr++C+aCrr+Wt+GG lr+vPvGg r+ ++++ Aco010304.1 29 PLRCPRCESANTKFCYYNNYSKSQPRHYCRACRRHWTAGGVLRDVPVGGLRKSKRRR 85 689********************************************9876665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-19 | 25 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.1E-30 | 30 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.31 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGLSSNHVSG NTVMASQQQQ QQKCESEVPL RCPRCESANT KFCYYNNYSK SQPRHYCRAC 60 RRHWTAGGVL RDVPVGGLRK SKRRRTSKSS PTADTTEDTS AASADLDTTV HAPLHHPTQF 120 PPLDCDVAWF SCPPPSATVN VVESSAYDDM TNPFSSVSSS STSGLSPCNL IGGLDEESLA 180 EFDYWDEMTD LVTLEHNSSP IPGRIVEGSW IE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020115207.1 | 1e-158 | dof zinc finger protein DOF1.1-like | ||||
TrEMBL | A0A199UVP1 | 1e-140 | A0A199UVP1_ANACO; Dof zinc finger protein DOF1.7 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 4e-25 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco010304.1 |