PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010195.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 328aa    MW: 35827.2 Da    PI: 8.0782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010195.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl
      Aco010195.1 14 KGPWSPEEDRKLKEYIETYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.23.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
      Aco010195.1  69 GDFSDDEDRIICNLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.408962IPR017930Myb domain
SuperFamilySSF466894.59E-2711109IPR009057Homeodomain-like
SMARTSM007175.1E-131364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241569IPR009057Homeodomain-like
CDDcd001674.73E-101662No hitNo description
PROSITE profilePS5129422.16663117IPR017930Myb domain
SMARTSM007172.1E-1167115IPR001005SANT/Myb domain
PfamPF002498.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
CDDcd001672.58E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDRKLKEYIE TYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC NLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF  120
PPNQRKPNQL QQQHKQQQQQ HQFFSSTLES TSPFSLPPSL EGMPAALSPY LTNPSTTTTT  180
TTTTTTTFSS PTPLQIGPLM PQLKESGSNL LIFGGDQSCS SSDGSCTQIH YGSGRDIEFD  240
LLNISAGDHQ QVSLESYLFN GVEDAQKLLL ISGGGGGGGG CGGASFEYNY PEEIKPIVGS  300
GNNGCNSLYL NDPTSGCIKN QGKYLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079833.10.0transcription factor MYB36-like
TrEMBLA0A199URZ30.0A0A199URZ3_ANACO; Transcription factor RAX3
STRINGXP_008800556.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36