PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 37479.2 Da PI: 7.3772 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl Aco010058.1 14 KGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 1e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ +++ G++ W+ Ia++++ gRt++++k++w++ Aco010058.1 69 GDFTDDEDRIICTLFASIGSR-WSIIASHLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.761 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.5E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.81 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNLKHGD FTDDEDRIIC TLFASIGSRW SIIASHLPGR TDNDIKNYWN TKLKRKLLGI 120 SPQKRPNQQQ HQQQLQQQQQ QHQLLFSSQS LLSSQDNYYT TQGSLLTGLH DHLPTLSQDG 180 NIVPSTTSTF TSPNYQFQLK ENTRNMIMFG GEQSCSSSDG SCTQISYGGG GGGGERLGFE 240 SFFYGSFEEN QKCFTGGGGG GGGGEGEVER SNGLFWDAPL EYNYEEIKQL LVSSNSGCNN 300 SSNNNNNNNN NGSSNSFFIV DDPETRNATK GSYKAYFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093662.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A199VDL5 | 0.0 | A0A199VDL5_ANACO; Transcription factor RAX1 | ||||
STRING | XP_008808878.1 | 1e-103 | (Phoenix dactylifera) | ||||
STRING | XP_010241795.1 | 1e-103 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-75 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Aco010058.1 |