PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009998.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

BES1

Protein Properties

Length: 329aa MW: 34692.7 Da PI: 9.3272

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009998.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	212.9	8.2e-66	3	149	2	149
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 ++gr ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+v++DGttyr+g+kp+e+a+++g sas sp+ss+q s++ Aco009998.1 3 TGGRLPTWRERENNRRRERRRRAIAAKIYAGLRAHGNYPLPKHCDNNEVLKALCAEAGWTVHPDGTTYRNGCKPPENADIIGGSASPSPCSSYQPSPR 100 799*****************************************************************************************9999 PP DUF822 100 ssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149 +s+ +sp +s+ asp+sss+ + ss +++ s++sl+p+l++ls++++s Aco009998.1 101 ASYNPSPSSSSLASPASSSYIAHSSNFINNI-SNSSLIPWLKNLSSSPAS 149 9999999999999999999998888555555.579*******997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.3E-67	4	144	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTTGGRLPTW RERENNRRRE RRRRAIAAKI YAGLRAHGNY PLPKHCDNNE VLKALCAEAG 60 WTVHPDGTTY RNGCKPPENA DIIGGSASPS PCSSYQPSPR ASYNPSPSSS SLASPASSSY 120 IAHSSNFINN ISNSSLIPWL KNLSSSPASS SKFPHLPSLH IPGGSISAPV TPPISSPTAR 180 TPRFKTDFND LNILPPWASP NCASLLNSTP PSPGRQTGPN PAWLAGIQIS SAGPLSPTFS 240 FVSSNPFGIF KEAVAGGSSS QMCTPGQSGT CSPVMGGSAG RGVPDEFAFR SNHVKGLVKA 300 WEGERIHEEC GSDELELTLG SSRTRADA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-23	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-23	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-23	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-23	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004070	4e-73	AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBank	AP014958	4e-73	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	4e-73	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096869.1	0.0	protein BZR1 homolog 3-like
Swissprot	Q5Z9E5	1e-132	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A199W642	0.0	A0A199W642_ANACO; Protein BZR 3
STRING	OMERI06G17170.1	1e-132	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-80	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Aco009998.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]