PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009993.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29600.6 Da    PI: 9.6409
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009993.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-313887150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Aco009993.1 38 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 87
                 79***********************************************8 PP
2K-box113.61.9e-371052023100
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +s++ s++ea+a+++qqe++kL+++i nLq+++R+llGe+L+++s ++L+qLe++Le++++kiR+kKnell+++ie++qk+e elq++n++Lr+k+ e
  Aco009993.1 105 TSNTGSVSEANAQYYQQEATKLRQQITNLQNSNRNLLGESLSTMSPRDLKQLETRLERAITKIRTKKNELLFAEIEYMQKREMELQNDNMYLRNKITE 202
                  3444459****************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-423089IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1323090IPR002100Transcription factor, MADS-box
CDDcd002656.26E-4531100No hitNo description
SuperFamilySSF554553.53E-3331103IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003286IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-333252IPR002100Transcription factor, MADS-box
PfamPF003199.6E-273986IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-335267IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-336788IPR002100Transcription factor, MADS-box
PfamPF014867.3E-28114200IPR002487Transcription factor, K-box
PROSITE profilePS5129715.64116206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGLSCFFFFF LHKKRATTEG ETLEQQSEKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK  60
AYELSVLCDA EVALIVFSSR GRLYEYANNS VKATIERYKK AYSDTSNTGS VSEANAQYYQ  120
QEATKLRQQI TNLQNSNRNL LGESLSTMSP RDLKQLETRL ERAITKIRTK KNELLFAEIE  180
YMQKREMELQ NDNMYLRNKI TENERTQQHM TMLPSTSEYE VMLPYDSRNF LQVNLLQPNQ  240
HYSNHQSTAL QLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-213098169Myocyte-specific enhancer factor 2B
1tqe_Q4e-213098169Myocyte-specific enhancer factor 2B
1tqe_R4e-213098169Myocyte-specific enhancer factor 2B
1tqe_S4e-213098169Myocyte-specific enhancer factor 2B
6c9l_A4e-213098169Myocyte-specific enhancer factor 2B
6c9l_B4e-213098169Myocyte-specific enhancer factor 2B
6c9l_C4e-213098169Myocyte-specific enhancer factor 2B
6c9l_D4e-213098169Myocyte-specific enhancer factor 2B
6c9l_E4e-213098169Myocyte-specific enhancer factor 2B
6c9l_F4e-213098169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7587540.0KR758754.1 Ananas comosus cultivar smooth cayenne MADS-box transcription factor (MADS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096955.11e-177MADS-box transcription factor 3-like isoform X1
SwissprotQ407041e-122MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A199W5B81e-176A0A199W5B8_ANACO; MADS-box transcription factor 3
STRINGXP_008791911.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]