PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009968.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 311aa    MW: 34467.3 Da    PI: 7.7472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009968.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-163683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde l  +v++ G g+W+t +++ g+ R++k+c++rw +yl
      Aco009968.1 36 RGPWTAEEDEVLSSYVRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 83
                     89******************************99************97 PP
2Myb_DNA-binding47.73.5e-1589134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      Aco009968.1  89 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 134
                      566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-222785IPR009057Homeodomain-like
PROSITE profilePS5129416.1883183IPR017930Myb domain
SuperFamilySSF466896.74E-2933130IPR009057Homeodomain-like
SMARTSM007171.5E-113585IPR001005SANT/Myb domain
PfamPF002495.4E-143683IPR001005SANT/Myb domain
CDDcd001671.17E-93883No hitNo description
PROSITE profilePS5129425.16484138IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2586139IPR009057Homeodomain-like
SMARTSM007172.7E-1488136IPR001005SANT/Myb domain
PfamPF002496.3E-1490134IPR001005SANT/Myb domain
CDDcd001671.32E-1194134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKNPVGASSS SLPSRGRGGV GGRGATPCCS KMGVKRGPWT AEEDEVLSSY VRREGEGRWR  60
TLPKRAGLLR CGKSCRLRWM NYLRPSIKRG PIAPDEEDLI LRLHRLLGNR WSLIAGRIPG  120
RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LVSSNHRPNH SNNPLPSLTS HGLHPPPATL  180
PYDLNPNPNP NNPTNNPNPE PNPSPAPGEV LRDHDHGNYL LHGVNLEQED DVFSSFFDSL  240
INDDIFLQQH QHQNIIESNG DNNENSDKSN DQIAAMDSGF VFGSLWEGTI SSQVSMFENL  300
HGQFINHAGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24361387108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097731.10.0transcription repressor MYB5-like
SwissprotQ388502e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2H3Y0H21e-107A0A2H3Y0H2_PHODC; transcription repressor MYB5-like
STRINGXP_008791485.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]