PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009909.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 486aa    MW: 54106.6 Da    PI: 8.1965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009909.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12321365554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + ErrRR++iN++f+ Lr llP+       K +Ka++L k+ eY++ L
  Aco009909.1 321 HMISERRRREKINESFHALRMLLPPG-----SKKDKASVLAKTKEYVNTL 365
                  8899********************95.....599************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-13316370No hitNo description
PROSITE profilePS5088815.656316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17317390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17320383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10321365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDSNHYTEIL YYLSPHPHIA HMDSLFLLST EARKRFLQSV SRILGCSYIC LWSPRSTYLI  60
CVDCWFHEDD SAQPSSLSKI LFDAYRSSPC SIVTGCVPGM AYKDGSPYIE LIGSNLVNSA  120
STQVQQQFYQ EAGIKTAIFM GCENGEIELG MTTTTTSNSN MQMNIQQVFS EDFIQQSLLG  180
DQPPPPPSSS SLRSLSMGSP PEFSSFKGST SSFMPPEAYA RLPFPTPAAD DAAMAQAMLA  240
VISSSPPPSL LYQPPQREQA PRQRAFKAYN AALRPKTDPV KPGVPGQKMI KMAVSMLRRV  300
HMMRFEARMP EPRPTSNQLH HMISERRRRE KINESFHALR MLLPPGSKKD KASVLAKTKE  360
YVNTLKAQIS ELEEKNRMLE SQLPPPTEQM KQVDSGDSSN RVEVQISSGS ESTSETRQIN  420
LNVIVRVECD TIDVLLRILE FLKGNGNINL VSINARSTQP QSNTYASANL TFQDKVNPPT  480
KYNSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329ERRRRE
2325330RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097722.10.0putative transcription factor bHLH041
TrEMBLA0A2H3ZKU91e-159A0A2H3ZKU9_PHODC; putative transcription factor bHLH041
STRINGXP_008782582.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-32bHLH family protein