PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009749.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 375aa    MW: 41792 Da    PI: 9.147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009749.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12219257948
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      de l +av+   g++Wk+Ia+ ++ gRt+ qc++rw k+l
      Aco009749.1 219 DEELMKAVEINKGKCWKKIAEGFP-GRTDQQCQHRWAKVL 257
                      899*********************.***********9875 PP
2Myb_DNA-binding56.94.9e-18263309148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd +l+++vk++G   W+ Ia+ ++ gR +kqc++rw+++l
      Aco009749.1 263 KGSWTHEEDNKLIHLVKKHGQSKWSIIANFLP-GRIGKQCRERWHNHL 309
                      799*****************************.*************97 PP
3Myb_DNA-binding25.23.9e-08315347135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +++WT+e + +l++a + +G++ W+ Ia+ +  gR
      Aco009749.1 315 KDAWTEEGEIKLIKAYRVHGNK-WAEIAKLLL-GR 347
                      679*******************.******997.87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.145206257IPR017930Myb domain
SMARTSM007173.4E-6210259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-17218264IPR009057Homeodomain-like
SuperFamilySSF466897.18E-10218261IPR009057Homeodomain-like
PfamPF002492.4E-10219257IPR001005SANT/Myb domain
CDDcd001673.23E-8219257No hitNo description
PROSITE profilePS5129430.903258313IPR017930Myb domain
SuperFamilySSF466891.31E-25260351IPR009057Homeodomain-like
SMARTSM007172.2E-17262311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-27265312IPR009057Homeodomain-like
CDDcd001671.87E-14265309No hitNo description
PfamPF139213.1E-18266326No hitNo description
Gene3DG3DSA:1.10.10.605.7E-12313351IPR009057Homeodomain-like
PROSITE profilePS512947.717314356IPR017930Myb domain
SMARTSM007172.4314367IPR001005SANT/Myb domain
CDDcd001674.77E-4317347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MPNLTLVRTG VLQVDLSLGI LEYVFTELPY HPSNKLHVGA TLIVAISGQE RARVFAGEAA  60
KRSQEISKEA AKRSQELTMG AACLSQELVS ETAKKSREIA AEATKKADLV HSEALRAAGQ  120
IKTLASDIPI PPIPPIPPIP SISAGSGSGS PAADDELKQF GVTEELREFV KGITISTFRD  180
FPMEDEPEIS EVPTVSNVRQ DLSEWQARHA TLVLSTVKDE ELMKAVEINK GKCWKKIAEG  240
FPGRTDQQCQ HRWAKVLNPH LVKGSWTHEE DNKLIHLVKK HGQSKWSIIA NFLPGRIGKQ  300
CRERWHNHLN PEIKKDAWTE EGEIKLIKAY RVHGNKWAEI AKLLLGRLKQ QAGFDVRISR  360
MFSWSFSLSF FLAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-5021934714142MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-5021934714142MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097707.10.0snRNA-activating protein complex subunit 4-like
TrEMBLA0A199UTY50.0A0A199UTY5_ANACO; Myb-related protein 3R-1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.15e-62myb domain protein 3r-3