PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 372aa MW: 41943.9 Da PI: 4.5085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.8 | 4.1e-34 | 47 | 138 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sw++ gnsfvv+d++ fa ++Lp+yFkh nf+SFvRQLn+YgF+kv++++ weF+++ F +g+k+ll+ ik Aco009685.1 47 FLTKTFDVVDDPATNRVVSWNRAGNSFVVWDPHAFAVSLLPRYFKHGNFSSFVRQLNTYGFRKVDTDR---------WEFANEGFLRGQKHLLRIIK 134 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Aco009685.1 135 RRKP 138 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-36 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-57 | 43 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-34 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.1E-31 | 47 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-19 | 47 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-19 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 86 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-19 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDSPPCVVVK EEFPGEEGSA PPPEGVRPHP GPPRPMEGLH DVGPPPFLTK TFDVVDDPAT 60 NRVVSWNRAG NSFVVWDPHA FAVSLLPRYF KHGNFSSFVR QLNTYGFRKV DTDRWEFANE 120 GFLRGQKHLL RIIKRRKPPS CPPSRQQPPS PCLEVGQFGL EGEIDRLKRD KNILLAEVVK 180 LRQVQQATRA NIEAMEDRIQ GTEKKQQQMM AFLAHAMQNP DFFQMLVQQQ DKRKEIEEAI 240 SKKRRRPIDK APFYDEGEAS PVEGSEAPFP FEFGEIPELD SLALEMLGSE NSVAEEIEGE 300 HKEGGDADSN DGFWEELLNE GIWKMERNSD LEGGDDDEDV DVLVQELGFL NSNSLKTAET 360 MRDGGRDWGD D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-24 | 45 | 136 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-24 | 45 | 136 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-24 | 45 | 136 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | RIIKRR |
2 | 231 | 245 | KRKEIEEAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087483.1 | 0.0 | heat stress transcription factor A-2c isoform X1 | ||||
Refseq | XP_020087489.1 | 0.0 | heat stress transcription factor A-2c isoform X1 | ||||
Swissprot | Q338B0 | 1e-136 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | A0A199VER3 | 0.0 | A0A199VER3_ANACO; Heat stress transcription factor A-2c | ||||
STRING | XP_008813517.1 | 1e-145 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-104 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Aco009685.1 |
Publications ? help Back to Top | |||
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