PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009612.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 429aa MW: 46754.9 Da PI: 8.0388

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009612.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4.1e-39	113	173	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Aco009612.1 113 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGSMRNVPVGAGRRKNKNSS 173 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-32	100	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MSESRDSAIK LFGKTIPLQP TGEHPPITDC GGDGGREEEK DLQENEAPPN TENQDQELAN 60 SEGKPEPPPL PPTPTDSSKP SPPDAATESS SQPEQKSSNT SSSEPKEKTL KKPDKILPCP 120 RCSSMDTKFC YFNNYNVNQP RHFCKKCQRY WTAGGSMRNV PVGAGRRKNK NSSSHYRNLT 180 VPSPSLRVVG ANNSCTVLSF GPDAPLSKPM ASVLSVGDQT MKDRTRNGVI VPENGAEKSS 240 GSSVIERNSE EERRINSKEK TAEKCQGIGN QFPSPCLNGT AWAYNPFYAQ SFAIPLYPAP 300 YWGCTMPANW TIPWASNFAV NTNSPTLGKH SRDGNGIKED NTNKAGNRNA APQEKCVWVP 360 KTLRIDDLDE AAKSSIWAMI GIKNGERGSV FNAFQTKVDA KDYSAENLQL LHANPAAFSR 420 SVNFHESS*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MSESRDSAIK LFGKTIPLQP TGEHPPITDC GGDGGREEEK DLQENEAPPN TENQDQELAN  60
SEGKPEPPPL PPTPTDSSKP SPPDAATESS SQPEQKSSNT SSSEPKEKTL KKPDKILPCP  120
RCSSMDTKFC YFNNYNVNQP RHFCKKCQRY WTAGGSMRNV PVGAGRRKNK NSSSHYRNLT  180
VPSPSLRVVG ANNSCTVLSF GPDAPLSKPM ASVLSVGDQT MKDRTRNGVI VPENGAEKSS  240
GSSVIERNSE EERRINSKEK TAEKCQGIGN QFPSPCLNGT AWAYNPFYAQ SFAIPLYPAP  300
YWGCTMPANW TIPWASNFAV NTNSPTLGKH SRDGNGIKED NTNKAGNRNA APQEKCVWVP  360
KTLRIDDLDE AAKSSIWAMI GIKNGERGSV FNAFQTKVDA KDYSAENLQL LHANPAAFSR  420
SVNFHESS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106276.1	0.0	cyclic dof factor 1-like isoform X2
TrEMBL	A0A199UDZ1	0.0	A0A199UDZ1_ANACO; Cyclic dof factor 3
STRING	XP_008806017.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-86	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Aco009612.1