PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009605.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 313aa    MW: 34461.5 Da    PI: 7.0518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009605.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
      Aco009605.1 14 KGPWTPEEDITLVSYIQEHGPGNWRAVPTQTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w++yl
      Aco009605.1  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.743961IPR017930Myb domain
SuperFamilySSF466893.91E-3011108IPR009057Homeodomain-like
SMARTSM007179.5E-131363IPR001005SANT/Myb domain
PfamPF002496.6E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241568IPR009057Homeodomain-like
CDDcd001673.44E-111661No hitNo description
PROSITE profilePS5129424.94462116IPR017930Myb domain
SMARTSM007174.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001676.45E-1269111No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2469117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRLPCCDKV GMKKGPWTPE EDITLVSYIQ EHGPGNWRAV PTQTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT YLKKKLKKLD  120
SDDQKSQNGF PSKHSSSSKG QWERRLQTDI NMAKRALCEA LSLDNTAPNS LLTNSQANPT  180
AHGCYNSSSI QPSTYASSAE NISRLLQGWK KNSPSRSCLS ETDSASSTSH GMGSASSNCI  240
VSPVPLDPFI GFCSSSSELS EGGRSPVIGD EGKVGVFEVQ TPLSLIESWL FDDDGVEQGG  300
EDFVHVSMDN IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086276.10.0myb-related protein 306-like
SwissprotP813921e-110MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A199VNS20.0A0A199VNS2_ANACO; Myb-related protein 306
STRINGXP_008801687.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-95myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]