PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009598.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 476aa    MW: 52547.4 Da    PI: 4.945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009598.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-153579348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT++Ed+ll + ++++G+++W++Ia+ +   +t  qc+ rw++yl
      Aco009598.1 35 TWTPQEDDLLREQIALHGTDNWTSIAAQFK-DKTSRQCRRRWYTYL 79
                     6****************************9.*************97 PP

2Myb_DNA-binding42.61.4e-1385128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+teEd ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
      Aco009598.1  85 KGGWSTEEDMLLCEAQKIFGNR-WTEIAKVVT-GRTDNAVKNRFST 128
                      688*******************.********9.**********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.3242883IPR017930Myb domain
SuperFamilySSF466892.02E-2632126IPR009057Homeodomain-like
SMARTSM007173.1E-143281IPR001005SANT/Myb domain
CDDcd001673.84E-143579No hitNo description
PfamPF139214.9E-163696No hitNo description
Gene3DG3DSA:1.10.10.603.5E-203687IPR009057Homeodomain-like
PROSITE profilePS5129415.83484134IPR017930Myb domain
SMARTSM007177.2E-1484132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-1888133IPR009057Homeodomain-like
CDDcd001673.77E-1088129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGTGSDVAAD AMISGDVAAA AAAAAPPKKE RHIVTWTPQE DDLLREQIAL HGTDNWTSIA  60
AQFKDKTSRQ CRRRWYTYLN SECKKGGWST EEDMLLCEAQ KIFGNRWTEI AKVVTGRTDN  120
AVKNRFSTLC KKRAKHEALY RENNGTCVDT NSKGVLIHNA CLAAGTGESS VPTKQMRYHI  180
SEYTENTITS ERLLGQHQRE EDQLIRPPLA VLVQNFDNVN GSNTQSHVDK SIKYPVNDEG  240
TVSSIKSQGI FLKRDDPKLA TLLQQAELLS SLALKVNAED TNQSLDDAWK ELQDYLIQTE  300
ESGALKRKMS GVASILDDFK ELIEDLKCSK EEDQQSLRQT NSNEDSLRCS EYSTEFSPQK  360
NVSGNTSELK NEDFPPNDSL IANVLHEDAS CSSAEPCPVG ALPSSENACS LSNMEFDSPA  420
QTVQPFHSYA EEIPTPQFTA SERHFLLTVL GSSSPASNPN CSQRPSCKRV LLDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-273613310107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6660991e-129KM666099.1 Ananas bracteatus clone 51328a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080778.10.0transcription factor MYB124-like isoform X3
RefseqXP_020106321.10.0transcription factor MYB124-like isoform X3
TrEMBLM0RJG31e-180M0RJG3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P18880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-114myb domain protein 88