PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco009598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 476aa MW: 52547.4 Da PI: 4.945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 35 | 79 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed+ll + ++++G+++W++Ia+ + +t qc+ rw++yl Aco009598.1 35 TWTPQEDDLLREQIALHGTDNWTSIAAQFK-DKTSRQCRRRWYTYL 79 6****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+teEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + Aco009598.1 85 KGGWSTEEDMLLCEAQKIFGNR-WTEIAKVVT-GRTDNAVKNRFST 128 688*******************.********9.**********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.324 | 28 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-26 | 32 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 32 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-14 | 35 | 79 | No hit | No description |
Pfam | PF13921 | 4.9E-16 | 36 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 36 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.834 | 84 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-14 | 84 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-18 | 88 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.77E-10 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence Send to blast |
MGTGSDVAAD AMISGDVAAA AAAAAPPKKE RHIVTWTPQE DDLLREQIAL HGTDNWTSIA 60 AQFKDKTSRQ CRRRWYTYLN SECKKGGWST EEDMLLCEAQ KIFGNRWTEI AKVVTGRTDN 120 AVKNRFSTLC KKRAKHEALY RENNGTCVDT NSKGVLIHNA CLAAGTGESS VPTKQMRYHI 180 SEYTENTITS ERLLGQHQRE EDQLIRPPLA VLVQNFDNVN GSNTQSHVDK SIKYPVNDEG 240 TVSSIKSQGI FLKRDDPKLA TLLQQAELLS SLALKVNAED TNQSLDDAWK ELQDYLIQTE 300 ESGALKRKMS GVASILDDFK ELIEDLKCSK EEDQQSLRQT NSNEDSLRCS EYSTEFSPQK 360 NVSGNTSELK NEDFPPNDSL IANVLHEDAS CSSAEPCPVG ALPSSENACS LSNMEFDSPA 420 QTVQPFHSYA EEIPTPQFTA SERHFLLTVL GSSSPASNPN CSQRPSCKRV LLDSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 36 | 133 | 10 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM666099 | 1e-129 | KM666099.1 Ananas bracteatus clone 51328a microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080778.1 | 0.0 | transcription factor MYB124-like isoform X3 | ||||
Refseq | XP_020106321.1 | 0.0 | transcription factor MYB124-like isoform X3 | ||||
TrEMBL | M0RJG3 | 1e-180 | M0RJG3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P18880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02820.2 | 1e-114 | myb domain protein 88 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco009598.1 |