PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009479.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRF
Protein Properties Length: 301aa    MW: 33363.6 Da    PI: 7.9603
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009479.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.53.1e-25132175144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+ep+rCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk +e
  Aco009479.1 132 DPEPWRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKLVE 175
                  79***************************************987 PP
2QLQ51.53.1e-182357236
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 +FT +Q+q+L+ Q+l++Ky+++++P+P++L+++i 
  Aco009479.1 23 PFTESQWQELELQALIFKYISSGLPIPSDLIFYIN 57
                 8*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.8E-82258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.552358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-132356IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.926132176IPR014977WRC domain
PfamPF088798.8E-21133175IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
SYCQLQQQMM METSGGRGRS MFPFTESQWQ ELELQALIFK YISSGLPIPS DLIFYINNIP  60
PGMYESLTLS CVKIFSADST NILDGSDAFH RYCCLPISQP AKREIAVGPA NGVGGCGWGC  120
FYQVGRRGAE EDPEPWRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGKNRS RKLVELSLST  180
SSTPASSTPI PAPADSSSPP SFASAAAVVA PQNQHLLFPC FTPSNPPTNC CTQPYKIHRN  240
LHGLRKDINE YPFFTGGIGS IGEPNPNSAY LQSSDCTFTT NPSSKERGQF YFFLGSDAKS  300
E
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098466e-38AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102001.10.0growth-regulating factor 1-like isoform X1
SwissprotQ6AWY82e-39GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLA0A199VIC31e-151A0A199VIC3_ANACO; Growth-regulating factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-37growth-regulating factor 5