PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bZIP | ||||||||
Protein Properties | Length: 281aa MW: 29744 Da PI: 6.7188 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.9e-10 | 96 | 138 | 8 | 50 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r NReA r++R++Kka ++ Le++v++L a N++L +l+ Aco009353.1 96 KRPFGNREAVRKYREKKKAHTASLEDEVAQLRAMNEQLTRRLQ 138 67777*********************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-15 | 83 | 157 | No hit | No description |
SMART | SM00338 | 9.9E-10 | 89 | 156 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.749 | 91 | 138 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 3.4E-15 | 91 | 146 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.96E-8 | 96 | 139 | No hit | No description |
CDD | cd14686 | 8.85E-13 | 101 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEESELDFSN PEVFSSHNVG NTPTSCSMDS FFDEILKDTH HHSCTHTHTC NPPGRDLSHT 60 HTCFHVHTKI LSSPADQSAD SAEKSPSKSP SASSKKRPFG NREAVRKYRE KKKAHTASLE 120 DEVAQLRAMN EQLTRRLQGQ AALEAEVARL RCLLVDIRGR IEGEIGSFPY QKIARAGAEV 180 GGRSVSDMRQ GNLIGGGGGG GGGGAQVVNS CDFPCDDQMY CFNVGVQGRA VGENGAVNGQ 240 GFGVCEMANV ECMGNGSKSF VGCGPGSVMT AGCSSNAEKN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM663152 | 7e-90 | KM663152.1 Ananas bracteatus clone 47432 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020113309.1 | 0.0 | basic leucine zipper 19-like | ||||
Swissprot | Q8VY76 | 1e-80 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | A0A199VLS5 | 0.0 | A0A199VLS5_ANACO; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P00670_001 | 1e-121 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 1e-68 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco009353.1 |
Publications ? help Back to Top | |||
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