PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco009304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 124aa MW: 12918.8 Da PI: 10.55 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 100.1 | 1.6e-31 | 22 | 110 | 19 | 99 |
NF-YC 19 helPlarikkilk........adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k a ++v+mis eaP+++skacelf+ elt r+w + krrtl+k d+aaa++ tdifdflv+ v ++ Aco009304.1 22 HSLPLARIKKIMKrsasgstaAGDEVRMISGEAPIVFSKACELFVEELTRRAWAVTVRGKRRTLHKDDVAAAIAATDIFDFLVELVSES 110 89***********444443333589***********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.95E-24 | 18 | 103 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-30 | 19 | 94 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.9E-17 | 23 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MRQAGAYSGL LSGGIGARTG PHSLPLARIK KIMKRSASGS TAAGDEVRMI SGEAPIVFSK 60 ACELFVEELT RRAWAVTVRG KRRTLHKDDV AAAIAATDIF DFLVELVSES NGNSSGGSGR 120 VLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-32 | 22 | 107 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020112974.1 | 5e-84 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 6e-32 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A199W3I5 | 1e-82 | A0A199W3I5_ANACO; Nuclear transcription factor Y subunit C-2 | ||||
STRING | Aquca_013_00352.1 | 3e-57 | (Aquilegia coerulea) | ||||
STRING | XP_008806887.1 | 7e-57 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-22 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco009304.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|