PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009304.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YC
Protein Properties Length: 124aa    MW: 12918.8 Da    PI: 10.55
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009304.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC100.11.6e-31221101999
        NF-YC  19 helPlarikkilk........adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  h+lPlarikki+k        a ++v+mis eaP+++skacelf+ elt r+w  +   krrtl+k d+aaa++ tdifdflv+ v ++
  Aco009304.1  22 HSLPLARIKKIMKrsasgstaAGDEVRMISGEAPIVFSKACELFVEELTRRAWAVTVRGKRRTLHKDDVAAAIAATDIFDFLVELVSES 110
                  89***********444443333589***********************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.95E-2418103IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-301994IPR009072Histone-fold
PfamPF008088.9E-172394IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRQAGAYSGL LSGGIGARTG PHSLPLARIK KIMKRSASGS TAAGDEVRMI SGEAPIVFSK  60
ACELFVEELT RRAWAVTVRG KRRTLHKDDV AAAIAATDIF DFLVELVSES NGNSSGGSGR  120
VLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-32221071693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112974.15e-84nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG76e-32NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A199W3I51e-82A0A199W3I5_ANACO; Nuclear transcription factor Y subunit C-2
STRINGAquca_013_00352.13e-57(Aquilegia coerulea)
STRINGXP_008806887.17e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-22nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]