PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 367aa MW: 39577.1 Da PI: 6.3086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l ++v+++G g+W+++ r g+ R++k+c++rw ++l Aco009029.1 22 KGPWTAAEDEILTEYVRRHGEGNWNAVRRNTGLLRCGKSCRLRWMNHL 69 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.9e-15 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++ ++++++qlG++ W++ a+ ++ gRt++++k++w++ Aco009029.1 75 KGSFTPQEELVIARLHAQLGNK-WALMASQLP-GRTDNEIKNYWNT 118 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.837 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-29 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-15 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-23 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-12 | 24 | 69 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 37 | 46 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 16.294 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-9 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMQGESPKGM AGAGAGAGEL KKGPWTAAED EILTEYVRRH GEGNWNAVRR NTGLLRCGKS 60 CRLRWMNHLR PDLKKGSFTP QEELVIARLH AQLGNKWALM ASQLPGRTDN EIKNYWNTRV 120 KRHRRAGLPL YPPDMQSFFF SSPPPSPTTP LQLGRQRRTV PPSPLMVERP LLFAFSTSAP 180 ASPILTNNGN GVPLLVPPLS QFAFPLSTPA SPSTSTAPLL PLLPPPLLAG NHELPSNQLV 240 VPGEALTAAA AATADAFMVD AMVEELRGDG ELLVAEACNV DQCSYISPHQ HGHAFDGSAG 300 INMKSEPQCA TESIDANQIL NTIPTPSTVT TDNELGLAMQ LEQCPLITEE DWNIGACPWN 360 NMPGMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 16 | 122 | 1 | 106 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096249.1 | 0.0 | transcription factor MYB26-like | ||||
Refseq | XP_020096250.1 | 0.0 | transcription factor MYB26-like | ||||
TrEMBL | A0A199URI0 | 0.0 | A0A199URI0_ANACO; Transcription factor GAMYB |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 5e-66 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Aco009029.1 |