PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 367aa    MW: 39577.1 Da    PI: 6.3086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009029.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l ++v+++G g+W+++ r  g+ R++k+c++rw ++l
      Aco009029.1 22 KGPWTAAEDEILTEYVRRHGEGNWNAVRRNTGLLRCGKSCRLRWMNHL 69
                     79******************************99************97 PP

2Myb_DNA-binding475.9e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E++ ++++++qlG++ W++ a+ ++ gRt++++k++w++
      Aco009029.1  75 KGSFTPQEELVIARLHAQLGNK-WALMASQLP-GRTDNEIKNYWNT 118
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.8371773IPR017930Myb domain
SuperFamilySSF466892.58E-2920116IPR009057Homeodomain-like
SMARTSM007177.5E-152171IPR001005SANT/Myb domain
PfamPF002495.5E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-232375IPR009057Homeodomain-like
CDDcd001673.12E-122469No hitNo description
PROSITE patternPS0017503746IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129416.29474124IPR017930Myb domain
SMARTSM007171.0E-1374122IPR001005SANT/Myb domain
PfamPF002491.2E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2476122IPR009057Homeodomain-like
CDDcd001671.42E-977118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMQGESPKGM AGAGAGAGEL KKGPWTAAED EILTEYVRRH GEGNWNAVRR NTGLLRCGKS  60
CRLRWMNHLR PDLKKGSFTP QEELVIARLH AQLGNKWALM ASQLPGRTDN EIKNYWNTRV  120
KRHRRAGLPL YPPDMQSFFF SSPPPSPTTP LQLGRQRRTV PPSPLMVERP LLFAFSTSAP  180
ASPILTNNGN GVPLLVPPLS QFAFPLSTPA SPSTSTAPLL PLLPPPLLAG NHELPSNQLV  240
VPGEALTAAA AATADAFMVD AMVEELRGDG ELLVAEACNV DQCSYISPHQ HGHAFDGSAG  300
INMKSEPQCA TESIDANQIL NTIPTPSTVT TDNELGLAMQ LEQCPLITEE DWNIGACPWN  360
NMPGMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30161221106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096249.10.0transcription factor MYB26-like
RefseqXP_020096250.10.0transcription factor MYB26-like
TrEMBLA0A199URI00.0A0A199URI0_ANACO; Transcription factor GAMYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-66myb domain protein 101