PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008987.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 333aa    MW: 37069.8 Da    PI: 6.8676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008987.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G ++W+++++  g+ R++k+c++rw +yl
      Aco008987.1 13 RGLWSPEEDEKLIKHITTHGHNCWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding51.32.7e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
      Aco008987.1  66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-26463IPR009057Homeodomain-like
PROSITE profilePS5129418.485860IPR017930Myb domain
SuperFamilySSF466892.43E-2810107IPR009057Homeodomain-like
SMARTSM007171.3E-131262IPR001005SANT/Myb domain
PfamPF002494.5E-151360IPR001005SANT/Myb domain
CDDcd001671.89E-121660No hitNo description
PROSITE profilePS5129425.75761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2564116IPR009057Homeodomain-like
SMARTSM007178.8E-1665113IPR001005SANT/Myb domain
PfamPF002491.0E-1466109IPR001005SANT/Myb domain
CDDcd001675.76E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIKHITT HGHNCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLMPT SRPPATVAGP NASQFNHPQP PTTPFTISSP SKSYDAMKST SMEVDLSMVN  180
SLPPSSLPFH EANNISMSSY QYMDCSSVMM GFKDHNSHSS IDFTNSSSTI DHANISSSSF  240
QPPGFMDEAS MWADAVDTLE AQKQNEAAVI AQQGNVQEQA QHLVGYNEAN EKGLEMDAYN  300
SAAFDLEFME SALMPCRVFC SGSAMEQLQW DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5785013e-37AJ578501.1 Elaeis guineensis microsatellite DNA, clone mEgCIR0146.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095201.10.0myb-related protein Myb4-like
TrEMBLA0A199W1340.0A0A199W134_ANACO; Transcription factor MYB86
STRINGXP_008798713.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-85myb domain protein 67