PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 256aa MW: 28098.6 Da PI: 5.4163 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 18 | 108 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sw eng++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkkv +++ weF+++sF++g+++ll++i+ Aco008972.1 18 FLMKTYELVDDPAVDDVVSWGENGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANESFRRGERRLLSEIH 105 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ Aco008972.1 106 RRR 108 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.75E-34 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-56 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.8E-38 | 15 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.1E-20 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-31 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-20 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MHPTRGSGAS ALSSSPPFLM KTYELVDDPA VDDVVSWGEN GSTFVVWRPA EFARDLLPKY 60 FKHNNFSSFV RQLNTYGFKK VVTDRWEFAN ESFRRGERRL LSEIHRRRVC PAVAVAVPMP 120 IQSPGSSGED PQVLSLSSTT SPPQPLPPPP PPPPHVDLAE ENEWLRTENA RLSRELGDMR 180 GLCSNIFRLV TTYTADEGTS SVPPPPPPAP PPPPQALELF PRRTSEEEAV SLLFGVPIGG 240 RREPSARAPG ADPEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-26 | 6 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 6 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 6 | 107 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106525 | 3e-70 | AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096501.1 | 0.0 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 2e-70 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A199V710 | 0.0 | A0A199V710_ANACO; Heat stress transcription factor B-2b | ||||
STRING | XP_008799550.1 | 2e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-59 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Aco008972.1 |
Publications ? help Back to Top | |||
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