PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ARF | ||||||||
Protein Properties | Length: 662aa MW: 72907 Da PI: 7.5127 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.2 | 3.7e-24 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d++g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ + +++ Aco008955.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVLAKDLHGEMWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RAENGD 213 89****************************996555555..8999*********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Aco008955.1 214 LCVGIRRA 221 9****997 PP | |||||||
2 | Auxin_resp | 112.5 | 3.9e-37 | 284 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gtv++ + +d ++WpnS+Wr+L+ Aco008955.1 284 AARLAASGQPFEVVYYPRASTPEFCVKAAAVRAAMSINWCPGMRFKMAFETEDSSRISWfMGTVSAAQIADHIKWPNSPWRLLQ 367 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-38 | 112 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-29 | 115 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-20 | 119 | 220 | No hit | No description |
SMART | SM01019 | 5.7E-22 | 120 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-22 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-32 | 284 | 367 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.28 | 554 | 634 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MKNVDTKCVD SQLWHACAGG MVQMPAVHSK VYYFPQGHAE HAVGPVEFAQ LRIPAFVLCR 60 VSAVKFLADP ETDEVFAKIR LIPIKPNDPN YCNEDEEYDD IDGIGLTMGG NDSREKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YSADPPVQTV LAKDLHGEMW KFRHIYRGTP 180 RRHLLTTGWS TFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRVGLDAPS GWNAPGGHCM 240 PTYETYSLFL REDERRLCKG NGNMSCSAIM SGKGRVGPES VSEAARLAAS GQPFEVVYYP 300 RASTPEFCVK AAAVRAAMSI NWCPGMRFKM AFETEDSSRI SWFMGTVSAA QIADHIKWPN 360 SPWRLLQVTW DEPDLLQNVR SVNPWLVELV SAIPSIRLGP FSSPRKRPRL PYPHPYHRPE 420 FPLESRLPSQ IYQGNPLGLG LGFTPAGIQG ARHAQFGIPL SDQTLLTPRI SKGLIVGSLP 480 IDENKTRVSF TKKSENGITP KLVLFGQPIL TEEQLSMSNS MNSSSDGSGS AINQNGTLDN 540 LSSDRWGSNL ALESGHCKVF MESEEIGRTV DLSIFGSYEE LYGQLADMFG VKKAKLMSHV 600 LYRDAAGALK HTGDEPFSEF MKTARRLTIL PDAGSDNLAR KQFLSFPAVS VIFSFCGDLD 660 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-77 | 9 | 388 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM667794 | 8e-61 | KM667794.1 Ananas bracteatus clone 53236a microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020095850.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_020095851.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A199V7D5 | 0.0 | A0A199V7D5_ANACO; Auxin response factor | ||||
STRING | XP_008785274.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Aco008955.1 |
Publications ? help Back to Top | |||
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