PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008934.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 283aa    MW: 31375.8 Da    PI: 6.93
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008934.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+ e +e +v+a  +   +   +W++Ia+ +  g+t++++k ++
      Aco008934.1  5 EWSWEQEEPFVRALVENQEDnadRWERIAAGLA-GKTAEEVKAHY 48
                     7********************************.**********9 PP
2Myb_DNA-binding38.23.4e-1288132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE++ ++++++ l +g+W+ I+r    gRt+ q+ s+ qky
      Aco008934.1  88 KWTLEEHKAFLRGIAVLRKGDWRGISRQYVPGRTPIQVASHAQKY 132
                      8**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539152IPR017877Myb-like domain
SMARTSM007173.5E-4254IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-7459IPR009057Homeodomain-like
CDDcd001671.08E-5548No hitNo description
Gene3DG3DSA:1.10.10.602.0E-980139IPR009057Homeodomain-like
PROSITE profilePS5129415.09581137IPR017930Myb domain
SuperFamilySSF466891.95E-1482138IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1184136IPR006447Myb domain, plants
SMARTSM007179.8E-885135IPR001005SANT/Myb domain
CDDcd001671.66E-888133No hitNo description
PfamPF002493.4E-988132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNNEEWSWEQ EEPFVRALVE NQEDNADRWE RIAAGLAGKT AEEVKAHYDL LAGDISLIES  60
GLVPLPDYVD DEVQVAPDQK KSRKPSTKWT LEEHKAFLRG IAVLRKGDWR GISRQYVPGR  120
TPIQVASHAQ KYFERQGKEQ SKKKRRSIHD VSLETLMPAT ANEPVNRHPA VQSNGSSNGQ  180
PIHQTDRPAN GTPTLDIDTS TNGSSTHRAP QLRDPPAPAH STPINLHPQQ LTPGIFIPLF  240
RSDDPRASAL NIPPLASRAP DTPTQSEQEP HRPRGSLHNP VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-146831188RADIALIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095110.10.0transcription factor SRM1-like
TrEMBLA0A199VFF30.0A0A199VFF3_ANACO; Transcription factor DIVARICATA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-38MYB family protein